Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_M02
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical pr... 144 5e-35
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 36 0.031
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 34 0.13
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 34 0.13
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 34 0.13
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 33 0.22
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 33 0.29
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.51
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.51
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 31 0.89
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 31 0.89
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.2
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 31 1.2
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 31 1.2
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 31 1.2
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 31 1.2
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 30 1.6
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 30 1.6
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 30 1.6
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 30 1.6
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 3.6
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 3.6
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc... 29 3.6
AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase assoc... 29 3.6
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 24 4.8
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.8
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 4.8
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 29 4.8
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 6.3
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 6.3
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 6.3
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 28 8.3
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 28 8.3
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 28 8.3
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 8.3
>Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical
protein B0393.1 protein.
Length = 276
Score = 144 bits (350), Expect = 5e-35
Identities = 75/156 (48%), Positives = 95/156 (60%)
Frame = +2
Query: 65 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 244
MSGG AL EEDV K+LA HLG+ N+NFQM+ YVYKRR DG ++IN+++TWEKL+L
Sbjct: 1 MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLL 60
Query: 245 AARAVVAIEXPADVFVISSRXFGQRAVLKFAAHTGATPIAGTFHTRXXXXXXXXXXXXXX 424
AARA+ A+E PADV V+S+R + QRA+LKFAAHTGAT I G F
Sbjct: 61 AARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPR 120
Query: 425 XXXXXWTLPXPSXLTEXSFVQIPGNGLGNQXXPLKI 532
+TE S+V +P N PLK+
Sbjct: 121 LLVISDPRIDHQAVTEASYVGVPVISFVNTESPLKL 156
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 35.9 bits (79), Expect = 0.031
Identities = 21/57 (36%), Positives = 22/57 (38%)
Frame = +2
Query: 581 GXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGPXXKXEGGXTXXPGXGGXG 751
G GG G G G GG +PP PPP G G GG G GG G
Sbjct: 91 GCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGGG 147
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/57 (35%), Positives = 20/57 (35%)
Frame = +2
Query: 581 GXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGPXXKXEGGXTXXPGXGGXG 751
G GG G G G GG P PPP G G GG G GG G
Sbjct: 33 GGGCGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGGGGCGGGGGCGGGG 89
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = +2
Query: 560 PXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGP 697
P PPP G GP GG PP PPP G PP P
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 32.3 bits (70), Expect = 0.39
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Frame = -1
Query: 756 GXPXPPXPGXXVXP----PSXFXXGPGGXEXFXPKXXGGGFGGEXPPXXPXPF*GPKPP 592
G P PP P + P P PGG P GGF G PP P P P
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAP 798
Score = 31.5 bits (68), Expect = 0.68
Identities = 25/79 (31%), Positives = 27/79 (34%)
Frame = +2
Query: 506 GNQXXPLKIGGIWFXXXNPXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSX 685
G P GG+ P PPP G G P G PP PPP G
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPG----GLPPISG-------GPPPPPPPPGGCPPPP 772
Query: 686 PPGPXXKXEGGXTXXPGXG 742
PP P +GG P G
Sbjct: 773 PPPPPGGFKGGPPPPPPPG 791
Score = 31.5 bits (68), Expect = 0.68
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = -1
Query: 756 GXPXPPXPGXXVXPPSXFXXGPGGXEXFXPKXXGGGFGGEXPPXXPXPF*GPKPPHXXPX 577
G P PP PG PP P P GG PP P P P PP P
Sbjct: 725 GPPPPPPPGGL--PPITGGPPPPPPPGGLPPISGG-----PPPPPPPPGGCPPPPPPPPP 777
Query: 576 GGGXXG 559
GG G
Sbjct: 778 GGFKGG 783
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 629 GGXSPPNPPPXXXGXXXSXPPGPXXKXEGGXTXXPGXGG 745
G PP PP G PPG GG P GG
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGG 750
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = +2
Query: 560 PXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGP 697
P PPP G GP GG PP PPP G PP P
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 32.3 bits (70), Expect = 0.39
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Frame = -1
Query: 756 GXPXPPXPGXXVXP----PSXFXXGPGGXEXFXPKXXGGGFGGEXPPXXPXPF*GPKPP 592
G P PP P + P P PGG P GGF G PP P P P
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAP 798
Score = 31.5 bits (68), Expect = 0.68
Identities = 25/79 (31%), Positives = 27/79 (34%)
Frame = +2
Query: 506 GNQXXPLKIGGIWFXXXNPXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSX 685
G P GG+ P PPP G G P G PP PPP G
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPG----GLPPISG-------GPPPPPPPPGGCPPPP 772
Query: 686 PPGPXXKXEGGXTXXPGXG 742
PP P +GG P G
Sbjct: 773 PPPPPGGFKGGPPPPPPPG 791
Score = 31.5 bits (68), Expect = 0.68
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = -1
Query: 756 GXPXPPXPGXXVXPPSXFXXGPGGXEXFXPKXXGGGFGGEXPPXXPXPF*GPKPPHXXPX 577
G P PP PG PP P P GG PP P P P PP P
Sbjct: 725 GPPPPPPPGGL--PPITGGPPPPPPPGGLPPISGG-----PPPPPPPPGGCPPPPPPPPP 777
Query: 576 GGGXXG 559
GG G
Sbjct: 778 GGFKGG 783
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 629 GGXSPPNPPPXXXGXXXSXPPGPXXKXEGGXTXXPGXGG 745
G PP PP G PPG GG P GG
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGG 750
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = +2
Query: 560 PXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGP 697
P PPP G GP GG PP PPP G PP P
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371
Score = 32.3 bits (70), Expect = 0.39
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Frame = -1
Query: 756 GXPXPPXPGXXVXP----PSXFXXGPGGXEXFXPKXXGGGFGGEXPPXXPXPF*GPKPP 592
G P PP P + P P PGG P GGF G PP P P P
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAP 381
Score = 31.5 bits (68), Expect = 0.68
Identities = 25/79 (31%), Positives = 27/79 (34%)
Frame = +2
Query: 506 GNQXXPLKIGGIWFXXXNPXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSX 685
G P GG+ P PPP G G P G PP PPP G
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPG----GLPPISG-------GPPPPPPPPGGCPPPP 355
Query: 686 PPGPXXKXEGGXTXXPGXG 742
PP P +GG P G
Sbjct: 356 PPPPPGGFKGGPPPPPPPG 374
Score = 31.5 bits (68), Expect = 0.68
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = -1
Query: 756 GXPXPPXPGXXVXPPSXFXXGPGGXEXFXPKXXGGGFGGEXPPXXPXPF*GPKPPHXXPX 577
G P PP PG PP P P GG PP P P P PP P
Sbjct: 308 GPPPPPPPGGL--PPITGGPPPPPPPGGLPPISGG-----PPPPPPPPGGCPPPPPPPPP 360
Query: 576 GGGXXG 559
GG G
Sbjct: 361 GGFKGG 366
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 629 GGXSPPNPPPXXXGXXXSXPPGPXXKXEGGXTXXPGXGG 745
G PP PP G PPG GG P GG
Sbjct: 295 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGG 333
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/61 (34%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Frame = -1
Query: 717 PPSXFXXGPGGXEXFXPKXXGGGFGGEXPPXXPXP---F*GPKPPHXXPXGGGXXGFXXX 547
PP F G G F P GG PP GP PPH GGG F
Sbjct: 756 PPPPFGRGAGPMSSFPPPPRGGMHHMPPPPSFRGGRGGHGGPPPPHFDRRGGGGPPFRPE 815
Query: 546 N 544
N
Sbjct: 816 N 816
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/69 (31%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Frame = +2
Query: 569 PPPLGXKWGGFGP*XGXGXXGGXSPP----NPPPXXXGXXXSXPPGPXXKXEGGXTXXP- 733
PPP+ G F P G G +PP P G PP P G P
Sbjct: 368 PPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQ 427
Query: 734 -GXGGXGXP 757
G GG G P
Sbjct: 428 GGPGGFGPP 436
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/63 (34%), Positives = 23/63 (36%)
Frame = -1
Query: 756 GXPXPPXPGXXVXPPSXFXXGPGGXEXFXPKXXGGGFGGEXPPXXPXPF*GPKPPHXXPX 577
G PP PG P S + GG F P GG G PP P G PP
Sbjct: 407 GGYGPPPPGGPGAPGS-YGPPQGGPGGFGPPPPGGP-GAYGPPPTGFPPVGAPPPGAAGA 464
Query: 576 GGG 568
GG
Sbjct: 465 PGG 467
Score = 28.7 bits (61), Expect = 4.8
Identities = 27/90 (30%), Positives = 27/90 (30%), Gaps = 5/90 (5%)
Frame = -1
Query: 750 PXPPXPGXXVXPPSXFXX-----GPGGXEXFXPKXXGGGFGGEXPPXXPXPF*GPKPPHX 586
P PG PPS F GPGG P G P P F P P
Sbjct: 382 PQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGP 441
Query: 585 XPXGGGXXGFXXXNQIPPIFRGXXWLPNPF 496
G GF PP G NPF
Sbjct: 442 GAYGPPPTGFPPVGAPPPGAAGAPG-GNPF 470
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.9 bits (69), Expect = 0.51
Identities = 26/86 (30%), Positives = 28/86 (32%), Gaps = 3/86 (3%)
Frame = +1
Query: 484 PNSREWVGQPXXPP-KNWGNLVXPXKPXXSPPXGXXMGGFWXLKXXGXXXGXFPPEPPPX 660
P+S W P PP + G P P PP G G PP PPP
Sbjct: 291 PSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGM----------GGMPPPPPPG 340
Query: 661 XFXXKXFPPPXXP--XKXGRGXXPXP 732
PPP P G G P P
Sbjct: 341 MRYPGGMPPPPPPRYPSAGPGMYPPP 366
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.9 bits (69), Expect = 0.51
Identities = 26/86 (30%), Positives = 28/86 (32%), Gaps = 3/86 (3%)
Frame = +1
Query: 484 PNSREWVGQPXXPP-KNWGNLVXPXKPXXSPPXGXXMGGFWXLKXXGXXXGXFPPEPPPX 660
P+S W P PP + G P P PP G G PP PPP
Sbjct: 301 PSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGM----------GGMPPPPPPG 350
Query: 661 XFXXKXFPPPXXP--XKXGRGXXPXP 732
PPP P G G P P
Sbjct: 351 MRYPGGMPPPPPPRYPSAGPGMYPPP 376
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 31.1 bits (67), Expect = 0.89
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = +2
Query: 560 PXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGPXXKXEGGXTXXPG- 736
P P P G G GP G GG P P G + PPGP G PG
Sbjct: 161 PCQPCPAGPP-GPPGPDGTPGEPGGPGPAGSPAGPSGPGPAGPPGPAGPP--GNDGQPGQ 217
Query: 737 XGGXG 751
GG G
Sbjct: 218 PGGPG 222
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 31.1 bits (67), Expect = 0.89
Identities = 22/66 (33%), Positives = 23/66 (34%)
Frame = +2
Query: 560 PXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGPXXKXEGGXTXXPGX 739
P P P G G GP G G PP PP P GP +GG PG
Sbjct: 147 PGRPGPRGPP-GEVGPAGPSGDNGRKGPPGPP--------GGPGGPGEGGDGGRPGNPGR 197
Query: 740 GGXGXP 757
G P
Sbjct: 198 PGPAGP 203
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Frame = +2
Query: 620 GXXGGXSPPNPPPXXXGXXXSXPPG-PXXKXEGGXTXXPGXGGXGXP 757
G G PP PP PPG P K G PG G P
Sbjct: 221 GEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGVDGQSGP 267
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Frame = +2
Query: 620 GXXGGXSPPNPPPXXXGXXXSXPPG-PXXKXEGGXTXXPGXGGXGXP 757
G G PP PP PPG P K G PG G P
Sbjct: 216 GEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGP 262
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Frame = +2
Query: 620 GXXGGXSPPNPPPXXXGXXXSXPPG-PXXKXEGGXTXXPGXGGXGXP 757
G G PP PP PPG P K G PG G P
Sbjct: 216 GEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGP 262
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/59 (35%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Frame = -1
Query: 744 PPXPGXXVXPPSXFXXGPGGXEXFXPKXXGGGFG---GEXPPXXPXPF-*GPKPPHXXP 580
PP P PP G G F P G G G PP P F GP PP P
Sbjct: 297 PPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYPPFFPP 355
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +1
Query: 631 GXFPPEPPPXXFXXKXFPPPXXPXKXGRGXXPXPG 735
G FPP PP F + PPP P G P G
Sbjct: 302 GHFPPPPP--HFMGRGMPPPFMPPPPHFGMGPPRG 334
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/59 (35%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Frame = -1
Query: 744 PPXPGXXVXPPSXFXXGPGGXEXFXPKXXGGGFG---GEXPPXXPXPF-*GPKPPHXXP 580
PP P PP G G F P G G G PP P F GP PP P
Sbjct: 297 PPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYPPFFPP 355
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +1
Query: 631 GXFPPEPPPXXFXXKXFPPPXXPXKXGRGXXPXPG 735
G FPP PP F + PPP P G P G
Sbjct: 302 GHFPPPPP--HFMGRGMPPPFMPPPPHFGMGPPRG 334
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +2
Query: 614 GXGXXGGXSPPNPPPXXXGXXXSXPPGPXXKXEGGXTXXPGXGGXG 751
G G G +PP PPP S PP + E P GG G
Sbjct: 22 GGGGGCGCAPPPPPPPCGCGGPSLPPLQLPRFELPRLSLPSFGGGG 67
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/67 (32%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Frame = +2
Query: 560 PXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGPXXKXEGGXTXXPG- 736
P P G G GP G G P P G + PPGP G PG
Sbjct: 145 PPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGP--AGPAGNDGAPGA 202
Query: 737 XGGXGXP 757
GG G P
Sbjct: 203 PGGPGEP 209
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/62 (29%), Positives = 20/62 (32%)
Frame = -1
Query: 744 PPXPGXXVXPPSXFXXGPGGXEXFXPKXXGGGFGGEXPPXXPXPF*GPKPPHXXPXGGGX 565
P PG P + GPG P G G + P P GP P P G
Sbjct: 200 PGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGP--GPAGPKGPPGAAGA 257
Query: 564 XG 559
G
Sbjct: 258 PG 259
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = -1
Query: 717 PPSXFXXGPGGXEXFXPKXXGGGFGGEXPPXXPXPF*GPKPPHXXPXGGGXXGFXXXNQ- 541
P + + G F GGGFGG P PF G + P GGG G Q
Sbjct: 38 PMNSYGNGYNNGGGFNNYGNGGGFGGNNYNNGPPPFDG---GYNRPYGGGGGGGYGRPQG 94
Query: 540 -IPP 532
+PP
Sbjct: 95 YVPP 98
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/67 (32%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Frame = +2
Query: 560 PXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGPXXKXEGGXTXXPG- 736
P P G G GP G G P P G + PPGP G PG
Sbjct: 145 PPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGP--AGPAGNDGAPGA 202
Query: 737 XGGXGXP 757
GG G P
Sbjct: 203 PGGPGEP 209
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/62 (29%), Positives = 20/62 (32%)
Frame = -1
Query: 744 PPXPGXXVXPPSXFXXGPGGXEXFXPKXXGGGFGGEXPPXXPXPF*GPKPPHXXPXGGGX 565
P PG P + GPG P G G + P P GP P P G
Sbjct: 200 PGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGP--GPAGPKGPPGAAGA 257
Query: 564 XG 559
G
Sbjct: 258 PG 259
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/67 (32%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Frame = +2
Query: 560 PXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGPXXKXEGGXTXXPG- 736
P P G G GP G G P P G + PPGP G PG
Sbjct: 145 PPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGP--AGPAGNDGAPGA 202
Query: 737 XGGXGXP 757
GG G P
Sbjct: 203 PGGPGEP 209
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/62 (29%), Positives = 20/62 (32%)
Frame = -1
Query: 744 PPXPGXXVXPPSXFXXGPGGXEXFXPKXXGGGFGGEXPPXXPXPF*GPKPPHXXPXGGGX 565
P PG P + GPG P G G + P P GP P P G
Sbjct: 200 PGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGP--GPAGPKGPPGAAGA 257
Query: 564 XG 559
G
Sbjct: 258 PG 259
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/67 (32%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Frame = +2
Query: 560 PXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGPXXKXEGGXTXXPG- 736
P P G G GP G G P P G + PPGP G PG
Sbjct: 145 PPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGP--AGPAGNDGAPGA 202
Query: 737 XGGXGXP 757
GG G P
Sbjct: 203 PGGPGEP 209
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/62 (29%), Positives = 20/62 (32%)
Frame = -1
Query: 744 PPXPGXXVXPPSXFXXGPGGXEXFXPKXXGGGFGGEXPPXXPXPF*GPKPPHXXPXGGGX 565
P PG P + GPG P G G + P P GP P P G
Sbjct: 200 PGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGP--GPAGPKGPPGAAGA 257
Query: 564 XG 559
G
Sbjct: 258 PG 259
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Frame = -1
Query: 750 PXPPXPGXXVXPPSXFXXGPGGXEXFXPKXXGGGFGGEXPPXXP-XPF*GPKPPHXXP 580
P PP PP P P GG GG PP P P G PP+ P
Sbjct: 771 PAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPPNMAP 828
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Frame = -1
Query: 750 PXPPXPGXXVXPPSXFXXGPGGXEXFXPKXXGGGFGGEXPPXXP-XPF*GPKPPHXXP 580
P PP PP P P GG GG PP P P G PP+ P
Sbjct: 771 PAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPPNMAP 828
>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
protein homologprotein 1, isoform a protein.
Length = 1256
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = -3
Query: 655 GGVRGGXXPXXPXAXLRXKTPPFXXQXGGKXWVXXGKPNSPN 530
G +GG P P A +R PP GK W+ N PN
Sbjct: 1081 GASQGGSSPAKPAAPVRK--PPHKELENGKQWIVEYFVNDPN 1120
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 640 PPEPPPXXFXXKXFPPPXXPXKXGR 714
PP PPP F PPP K R
Sbjct: 1015 PPPPPPADFFANIAPPPVDADKASR 1039
>AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform b protein.
Length = 495
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = -3
Query: 655 GGVRGGXXPXXPXAXLRXKTPPFXXQXGGKXWVXXGKPNSPN 530
G +GG P P A +R PP GK W+ N PN
Sbjct: 320 GASQGGSSPAKPAAPVRK--PPHKELENGKQWIVEYFVNDPN 359
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 640 PPEPPPXXFXXKXFPPPXXPXKXGR 714
PP PPP F PPP K R
Sbjct: 254 PPPPPPADFFANIAPPPVDADKASR 278
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 24.2 bits (50), Expect(2) = 4.8
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1
Query: 603 PKPPHXXPXGGGXXGFXXXNQIPPI 529
P PP P G G G Q+PP+
Sbjct: 31 PPPPPPSPCGCGGGGGLALPQLPPL 55
Score = 23.0 bits (47), Expect(2) = 4.8
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -1
Query: 669 PKXXGGGFGGEXPPXXPXP 613
P GGG G PP P P
Sbjct: 20 PSGGGGGCGCAPPPPPPSP 38
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +2
Query: 641 PPNPPPXXXGXXXSXPPGPXXKXEGGXT-XXPGXGGXGXP 757
PP PPP G + PP P GG + P G P
Sbjct: 40 PPPPPPPCGGGYEAPPPPPPPSYAGGPSYAGPSYAGSYGP 79
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/61 (36%), Positives = 23/61 (37%)
Frame = +2
Query: 569 PPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGPXXKXEGGXTXXPGXGGX 748
P P G GG G G G GG +PP P P G G GG G GG
Sbjct: 52 PAPCGGGCGGGG--GGCGGGGGCAPP-PAPCGGGCGGGG--GGCGGGGGGCGGGGGCGGG 106
Query: 749 G 751
G
Sbjct: 107 G 107
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/61 (36%), Positives = 23/61 (37%)
Frame = +2
Query: 569 PPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGPXXKXEGGXTXXPGXGGX 748
P P G GG G G G GG +PP P P G G GG G GG
Sbjct: 52 PAPCGGGCGGGG--GGCGGGGGCAPP-PAPCGGGCGGGG--GGCGGGGGGCGGGGGCGGG 106
Query: 749 G 751
G
Sbjct: 107 G 107
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +2
Query: 557 NPXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGP 697
NP PP G G F P G GG PP P PPGP
Sbjct: 201 NPSEAPPSGGPTGPFDP-SGAPPSGG--PPGPFNPSGAPPSGGPPGP 244
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +2
Query: 557 NPXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGP 697
NP PP G G F P G GG PP P PPGP
Sbjct: 456 NPSGAPPSGGPPGPFNP-SGAPPSGG--PPGPFDPSGAPPSGGPPGP 499
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +2
Query: 557 NPXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGP 697
NP PP G G F P G GG PP P PPGP
Sbjct: 261 NPSGAPPSGGPPGPFDP-SGAPPSGG--PPGPFDPSGAPPSGGPPGP 304
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +2
Query: 557 NPXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGP 697
NP PP G G F P G GG PP P PPGP
Sbjct: 351 NPSGAPPSGGPPGPFDP-SGAPPSGG--PPGPFDPSGAPPSGGPPGP 394
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +2
Query: 557 NPXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGP 697
NP PP G G F P G GG PP P PPGP
Sbjct: 411 NPSGAPPSGGPPGPFNP-SGAPPSGG--PPGPFNPSGAPPSGGPPGP 454
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +2
Query: 557 NPXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGP 697
NP PP G G F P G GG PP P PPGP
Sbjct: 426 NPSGAPPSGGPPGPFNP-SGAPPSGG--PPGPFNPSGAPPSGGPPGP 469
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +2
Query: 557 NPXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGP 697
NP PP G G F P G GG PP P PPGP
Sbjct: 441 NPSGAPPSGGPPGPFNP-SGAPPSGG--PPGPFNPSGAPPSGGPPGP 484
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +2
Query: 557 NPXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGP 697
NP PP G G F P G GG PP P PPGP
Sbjct: 231 NPSGAPPSGGPPGPFDP-SGAPPSGG--PPGPFNPSGAPPSGGPPGP 274
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +2
Query: 557 NPXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGP 697
NP PP G G F P G GG PP P PPGP
Sbjct: 321 NPSGAPPSGGPPGPFDP-SGAPPSGG--PPGPFNPSGAPPSGGPPGP 364
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +2
Query: 557 NPXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGP 697
NP PP G G F P G GG PP P PPGP
Sbjct: 471 NPSGAPPSGGPPGPFDP-SGAPPSGG--PPGPFNPSGAPPSGGPPGP 514
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -1
Query: 705 FXXGPGGXEXFXPKXXGGGFGGEXPPXXPXPF*G 604
F G GG F P+ GGGF G P F G
Sbjct: 14 FRGGRGGGSGFTPRGGGGGFRGGDRGRSPGGFRG 47
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/61 (37%), Positives = 23/61 (37%)
Frame = -1
Query: 750 PXPPXPGXXVXPPSXFXXGPGGXEXFXPKXXGGGFGGEXPPXXPXPF*GPKPPHXXPXGG 571
P PP PG PP F GG P GG PP P P G PP P G
Sbjct: 75 PPPPGPGGIPPPPPMF---AGGIPP-PPPMMGG-----IPP--PPPMFGAPPPPPPPSGL 123
Query: 570 G 568
G
Sbjct: 124 G 124
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Frame = +2
Query: 593 GGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGPXXK-XEGGXTXXPGXGG 745
G GP G G PP PP GP E G PG GG
Sbjct: 220 GSIGPKGDPGDLGSVGPPGPPGPREFTGSGSIVGPRGNPGEKGDKGEPGEGG 271
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +2
Query: 593 GGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGPXXK-XEGGXTXXPGXGG 745
G GP G +PP PP PPGP K + G PG G
Sbjct: 207 GEKGPTGEPGKVINGAPPGPPGPPGPPGPQGPPGPPGKDGQPGKAGPPGLPG 258
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Frame = +2
Query: 593 GGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGPXXK-XEGGXTXXPGXGG 745
G GP G G PP PP GP E G PG GG
Sbjct: 220 GSIGPKGDPGDLGSVGPPGPPGPREFTGSGSIVGPRGNPGEKGDKGEPGEGG 271
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 593 GGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGP 697
GG G G G G +PP PPP + P P
Sbjct: 25 GGGGYSGGGGGGGDAAPPPPPPADAAPAPAPAPEP 59
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/64 (32%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Frame = -1
Query: 744 PPXPGXX-VXPP-SXFXXGPGGXEXFXPKXXGGGFGGEXPPXXPXPF*GPKPPHXXPXGG 571
P PG PP + PG F P G G G PP P P GP P G
Sbjct: 260 PQGPGMPRAFPPGASAPVAPGMPGAFPPGQGGPGMPGSFPPGAPGPG-GPGMPGSFAPGA 318
Query: 570 GXXG 559
G
Sbjct: 319 PGPG 322
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = -1
Query: 744 PPXP-GXXVXPPSXFXXGPGGXEXFXPKXXGGGFGGEXPPXXPXPF*GP 601
PP P G P GP G + P GGG G PP P P P
Sbjct: 176 PPGPAGPAGGPGPAGPPGPAGADGNTPS--GGGEGPAGPPGPPGPAGNP 222
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 640 PPEPPPXXFXXKXFPPPXXPXKXGRGXXPXP 732
PP PPP PPP P G P P
Sbjct: 562 PPPPPPLPQNLSGAPPPPPPPPPMLGGPPPP 592
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,740,284
Number of Sequences: 27780
Number of extensions: 429260
Number of successful extensions: 1690
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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