Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_M01
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   153   2e-38
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   149   5e-37
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    29   0.70 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   2.8  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   8.6  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  153 bits (372), Expect = 2e-38
 Identities = 70/103 (67%), Positives = 85/103 (82%)
 Frame = +3

Query: 78  VLALNEEDITKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 257
           VL   ++DI  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 258 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFT 386
            IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FT
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFT 112


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  149 bits (360), Expect = 5e-37
 Identities = 66/107 (61%), Positives = 86/107 (80%)
 Frame = +3

Query: 66  GGLDVLALNEEDITKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 245
           G  ++L   +EDI ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 246 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFT 386
           R +  IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FT
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFT 111


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = +3

Query: 201 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGA 380
           V+++R TW +LV+  +  + + N  ++ +I++    +  V+ FA H           PG 
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPGD 148

Query: 381 FTXPXSXAAFP 413
                   A P
Sbjct: 149 IYLASLDTAIP 159


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 398 GXWXSKSTWCETSRNR 351
           G W +KS+WC ++ NR
Sbjct: 303 GNWYTKSSWCPSNSNR 318


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = -2

Query: 285 RTHQRGSRWLRQHEQPEQVFPRYDA 211
           R H++ + W ++HE+P+ +   +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,488
Number of Sequences: 5004
Number of extensions: 37993
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)