Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_M01
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 148 5e-36
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 145 3e-35
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 6.8
03_01_0515 - 3864796-3865425 28 6.8
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 6.8
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 28 9.0
04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727 28 9.0
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 9.0
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 148 bits (358), Expect = 5e-36
Identities = 69/113 (61%), Positives = 85/113 (75%)
Frame = +3
Query: 48 ISATMSGGLDVLALNEEDITKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 227
++A G L+ E+D+ MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 228 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFT 386
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FT
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFT 113
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 145 bits (352), Expect = 3e-35
Identities = 68/102 (66%), Positives = 80/102 (78%)
Frame = +3
Query: 81 LALNEEDITKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 260
L+ E+DI MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 261 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFT 386
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FT
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFT 113
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 330 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 175
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/67 (31%), Positives = 26/67 (38%)
Frame = +3
Query: 231 LVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTXPXSXAAF 410
L L A VVAI N D + P + + T A+P P + P AA
Sbjct: 8 LALLATFVVAIANADDYTTAAPAPSPEAEASPPSPPTEASPPPLAPPPSVTSSPPPPAAG 67
Query: 411 PXNPXPP 431
P P PP
Sbjct: 68 PLMPPPP 74
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 155 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 262
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +3
Query: 6 FASQWHYTRLVVTQISATMSGGLDVLALNEEDITKMLAATTHLGAENVNFQMETY 170
F ++ HY + VT +AT G + ++ L +ED+ K L+A H E + MET+
Sbjct: 247 FRNKGHYIKSQVT--AAT--GAIALMQL-QEDLKKHLSAECHYTEEELEAYMETH 296
>04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727
Length = 706
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 158 DGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRA 337
DG Q+ C + C L+ + +CSG CC++ PR + +T + +++ R
Sbjct: 153 DGGTGYQSGC-FSQCRDLSGLVDGSCSGMGCCQT-TIPRGMYYYNVTFDKRFNTSQISRF 210
Query: 338 HRC 346
RC
Sbjct: 211 GRC 213
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 191 WYPCDQLASYLGKTCSGCSCCRSHREP 271
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,347,422
Number of Sequences: 37544
Number of extensions: 317221
Number of successful extensions: 638
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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