Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_L23
(831 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.26
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.26
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 30 0.35
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.46
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.46
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.1
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 27 3.3
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 4.3
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p... 26 7.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 10.0
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.26
Identities = 20/66 (30%), Positives = 20/66 (30%)
Frame = -1
Query: 816 PXXPXXXXPXPPGXXGPGQGPXXTGXPAXPPXPGXXFXPPXGPXAPXVPPPXGPGXXPQG 637
P P P P P Q P PP P PP P P PP P P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQ----MSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738
Query: 636 PERSHP 619
S P
Sbjct: 1739 SAPSVP 1744
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.26
Identities = 18/57 (31%), Positives = 20/57 (35%)
Frame = -1
Query: 792 PXPPGXXGPGQGPXXTGXPAXPPXPGXXFXPPXGPXAPXVPPPXGPGXXPQGPERSH 622
P PP P P G PA PP P PP P P PQ R++
Sbjct: 448 PLPPS--APIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQDGRAN 502
Score = 29.1 bits (62), Expect = 0.81
Identities = 18/61 (29%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Frame = -1
Query: 816 PXXPXXXXPXPPGXXGPGQGPXXTGXPAXPP-XPGXXFXPPXGPXAPXVP--PPXGPGXX 646
P P PP G PA PP P PP P P PP P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Query: 645 P 643
P
Sbjct: 478 P 478
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Frame = -1
Query: 807 PXXXXPXPPGXXGPGQGPXXTGX-PAXPPXPGXXFXPPXGPXAPXVPPPXGPGXXPQGPE 631
P P PG P P + PP P PP P P +PP P P G
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAP--PSLPPS-APPSLPMGAP 444
Query: 630 RSHP 619
+ P
Sbjct: 445 AAPP 448
Score = 26.6 bits (56), Expect = 4.3
Identities = 19/71 (26%), Positives = 21/71 (29%), Gaps = 2/71 (2%)
Frame = -1
Query: 825 KKGPXXPXXXXPXPPGXXGPGQGPXXTGXPAXPPXPGXXFXP--PXGPXAPXVPPPXGPG 652
KK P P G G G + P PP P P P PPP P
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367
Query: 651 XXPQGPERSHP 619
P + P
Sbjct: 368 SAPSTGRQPPP 378
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 30.3 bits (65), Expect = 0.35
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 242 VRVHRANTGRSSNELDRQTTELERR 316
+R H+ + GR+ ELDR+ T+L++R
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQR 42
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.46
Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Frame = -1
Query: 792 PXPPGXXGPGQGPXXTGXPAXP--PXPGXXFXPPXGPXAPXVPPPXGPGXXPQGPERSHP 619
P PP + P T P P P P PP AP +P P P P +S P
Sbjct: 128 PAPPTPQSELRPP--TSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = -1
Query: 807 PXXXXPXPPGXXGPGQGPXXTGXPAXPPXPGXXFXPPXGPXAPXVPPPXGP 655
P P P P PP P PP P AP PP P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSS-LPPPAQPAAPVKSPPSAP 188
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.46
Identities = 18/64 (28%), Positives = 20/64 (31%)
Frame = -1
Query: 816 PXXPXXXXPXPPGXXGPGQGPXXTGXPAXPPXPGXXFXPPXGPXAPXVPPPXGPGXXPQG 637
P P PP G P A PP P PP + PP P P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161
Query: 636 PERS 625
P+ S
Sbjct: 1162 PKPS 1165
Score = 29.5 bits (63), Expect = 0.61
Identities = 20/65 (30%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Frame = -1
Query: 816 PXXPXXXXPXPPGXXGPGQGPXXTGXPAXPPXPGXXF-XPPXGPXAPXVPPPXGPGXXPQ 640
P P PP G P A PP P PP A VPP P P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 639 GPERS 625
P+ S
Sbjct: 1200 VPKPS 1204
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/60 (26%), Positives = 16/60 (26%)
Frame = -1
Query: 792 PXPPGXXGPGQGPXXTGXPAXPPXPGXXFXPPXGPXAPXVPPPXGPGXXPQGPERSHPXV 613
P PP P G P PP P P VP P P P V
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSV 1249
Score = 27.1 bits (57), Expect = 3.3
Identities = 20/66 (30%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Frame = -1
Query: 816 PXXPXXXXPXPPGXXGPGQGPXXTGXPAX--PPXPGXXFXPPXGPXAPXVPPPXGPGXXP 643
P P PP P G PA PP P PP + VPP P P
Sbjct: 1159 PPVPKPSVAAPP-VPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
Query: 642 QGPERS 625
P S
Sbjct: 1218 PVPTPS 1223
Score = 26.6 bits (56), Expect = 4.3
Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Frame = -1
Query: 807 PXXXXPXPPGXXGPGQGPXXTGXP-AXPPXPGXXFXPPXGPXAPXVPPPXGPGXXPQGPE 631
P P P P +G P A PP P P P PP P P P+
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPK 1096
Query: 630 RS 625
S
Sbjct: 1097 PS 1098
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/54 (27%), Positives = 16/54 (29%)
Frame = -1
Query: 816 PXXPXXXXPXPPGXXGPGQGPXXTGXPAXPPXPGXXFXPPXGPXAPXVPPPXGP 655
P P PP G P A PP P PP + PP P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/54 (27%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Frame = -1
Query: 783 PGXXGPGQGPXXTGXPAXPPXPGXXF-XPPXGPXAPXVPPPXGPGXXPQGPERS 625
P P P PP P PP + VPP P P P+ S
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPS 1127
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/53 (35%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = -1
Query: 816 PXXPXXXXPXP-PGXXG-PGQGPXXTGXPAXPPXPGXXFXPPXGPXAPXVPPP 664
P P P P P P P G P PP PG GP P PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG---VAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = -1
Query: 792 PXPPGXXGPGQGPXXTGXPAXPPXPGXXFXPPXGPXAPXVPPPXGPGXXP 643
P PP P P P P G PP P PP P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -1
Query: 738 PAXPPXPGXXFXPPXGPXAPXVPPPXGPGXXPQGPERSHPXV 613
PA P P P G P PPP G P P P V
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 111 RMRKRNITVPHDRLAPRNVRSGLPPDSKIVVNLTLHLRHANIRESEST 254
R+R RNIT+ D++ PR + + P +V++L L H+ R S +T
Sbjct: 279 RLRIRNITLCADKI-PRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTT 325
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -3
Query: 223 LKCRVRLTTILESGGSPDRTLRGASRS*GTVMLRFRI 113
LK + TT +E GG +TLR S V LR RI
Sbjct: 804 LKIQPLRTTSMEPGGETSQTLRVHGPSGSQVKLRLRI 840
>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 159
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 19 IASIDQLS*NVDDLYYSXYRFLLTCAIASAAECENATSL 135
+ASI LS + L Y+ Y+ LL + A + C+N +L
Sbjct: 83 VASIQGLSVDHRSLVYNHYKHLLEASDAINSFCKNLNTL 121
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 744 GXPAXPPXPGXXFXPPXGPXAPXVPPP 664
G P PP P F PP P P PPP
Sbjct: 7 GNPPPPPPP-PGFEPPSQPPPP--PPP 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,153
Number of Sequences: 5004
Number of extensions: 55032
Number of successful extensions: 202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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