Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_L18
(1290 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 32 1.1
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 2.6
03_01_0515 - 3864796-3865425 30 3.4
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 30 4.6
01_06_0146 + 26969011-26969995,26970878-26970930 30 4.6
02_01_0302 - 2021221-2023305 29 6.0
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 8.0
05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572... 29 8.0
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/65 (27%), Positives = 19/65 (29%)
Frame = +2
Query: 845 PGGGXXRXXXAPXPXXXAVXVPXXXXXXPXPAXAXXSVDPXVXXXPRXPKXPPXPQRXPX 1024
PG G AP P P P P+ A P P P P P P
Sbjct: 310 PGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPG 369
Query: 1025 XAPXP 1039
P P
Sbjct: 370 PPPPP 374
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.7 bits (66), Expect = 2.6
Identities = 26/85 (30%), Positives = 27/85 (31%)
Frame = -1
Query: 855 PPPGAXXRXHXRXAYXDXXTXPRPPXPXAXXFXGGPLPAAXXGPXRXXXXGVYXGGXGXX 676
PPP A R P PP P GGP P P GV GG
Sbjct: 1163 PPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGP-PTPPGAPAPPMPPGV-PGGPPPP 1220
Query: 675 XDGXGFLXPPARXXPGPRGXXRHAV 601
G G P PG RG H +
Sbjct: 1221 PGGRGLPAP-----PGGRGVVGHGL 1240
>03_01_0515 - 3864796-3865425
Length = 209
Score = 30.3 bits (65), Expect = 3.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 57 PXXXXPPXXAPXXXXPXLPPPSXPPP 134
P PP P P PPPS PPP
Sbjct: 84 PPPPLPPPPPPPAASPPPPPPSPPPP 109
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 29.9 bits (64), Expect = 4.6
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 57 PXXXXPPXXAPXXXXPXLPPPSXPPP 134
P PP P P +PPP PPP
Sbjct: 431 PPPPPPPPPPPPPLPPNMPPPLPPPP 456
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 29.9 bits (64), Expect = 4.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 57 PXXXXPPXXAPXXXXPXLPPPSXPP 131
P PP AP P PPPS PP
Sbjct: 99 PRAAPPPAPAPDQPAPPSPPPSLPP 123
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.5 bits (63), Expect = 6.0
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = +3
Query: 906 SPPXAXXXRXQLPPXXLXTPTSXXPPAXQSXPPXPSDXXXXLXPP 1040
SPP + PP TP+ PP + P PS PP
Sbjct: 485 SPPGSTTPSYPSPPSSSTTPSYHSPPQGHTTPSHPSPPSSSTAPP 529
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.1 bits (62), Expect = 8.0
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 57 PXXXXPPXXAPXXXXPXLPPPSXPPP 134
P PP P P PPP+ PPP
Sbjct: 108 PPPPPPPSPPPSAPPPPPPPPTQPPP 133
>05_05_0334 + 24156532-24156565,24156681-24156782,24157145-24157274,
24157361-24157445,24157525-24157666,24157762-24157894,
24157993-24158254,24158331-24158519,24158596-24158721,
24158809-24159195,24159288-24159398,24159629-24160423,
24161114-24161255,24161350-24162518,24162609-24162818,
24163010-24163478,24164037-24164464
Length = 1637
Score = 29.1 bits (62), Expect = 8.0
Identities = 22/80 (27%), Positives = 22/80 (27%)
Frame = -1
Query: 1083 GGRGXGXXXG*XXX*GXGAXXGXRWGXGGXFGXRGXXXTXGSTXXXAXAGXGXWXXXXGT 904
GG G G G G G G WG GG G G G W G
Sbjct: 1532 GGGGGGNSGGWTDNIGSG---GGGWGTGGGSSWAGGGDGGSGGGDSNRGGGGGWGTPAGG 1588
Query: 903 XTAXXXGXGAXXXRXXPPPG 844
G GA PG
Sbjct: 1589 SDGGGGGWGAAPGGSNDAPG 1608
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.141 0.493
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,381,365
Number of Sequences: 37544
Number of extensions: 393967
Number of successful extensions: 3512
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3080
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4015679940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -