Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_L15
         (972 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    42   2e-04
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    40   7e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    35   0.015
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   0.022
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.57 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.99 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    23   1.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    28   1.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   2.3  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   5.3  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    23   5.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 683 PPPPPPPXKXXXGGG--GGGXXXKKXPPPPPPP 775
           PPPPPPP +   G    G G      PPPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 35.9 bits (79), Expect = 0.009
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 683 PPPPPPPXKXXXGGGGGGXXXKKXPPPPPP 772
           PPPPPPP     G        +  PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 33.5 bits (73), Expect = 0.046
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 686 PPPPPPXKXXXGGGGGGXXXKKXPPPPPPP 775
           PPPPPP +    G        +  PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 31.5 bits (68), Expect = 0.19
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +2

Query: 683 PPPPPPPXKXXXGGGGGGXXXKKXPPPPPPP 775
           PP PPP  +            KK PPPPPPP
Sbjct: 290 PPLPPPSSRVSAAALAAN---KKRPPPPPPP 317


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 39.5 bits (88), Expect = 7e-04
 Identities = 19/33 (57%), Positives = 19/33 (57%)
 Frame = +1

Query: 679 PPPPPPPPXKXXXGGGGGGXFXXKXPPPPPPPP 777
           PPPPPPPP     G  G G      PPPPPPPP
Sbjct: 761 PPPPPPPP-----GVAGAGP-----PPPPPPPP 783



 Score = 31.5 bits (68), Expect = 0.19
 Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
 Frame = +1

Query: 637 GGPXPXKKKKXXXX--PPPPPPPPXKXXXGGGGGGXFXXKXPPPPPPP 774
           GGP P           PPPPPPPP        GG  +    P   P P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAV---SAGGSRYYAPAPQAEPEP 803



 Score = 29.5 bits (63), Expect = 0.75
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +1

Query: 679 PPPPPPPPXKXXXGGGGGGXFXXKXPPPPPPPP 777
           P P P PP     GG          PPPPPPPP
Sbjct: 746 PAPIPVPPPAPIMGG----------PPPPPPPP 768



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
 Frame = +2

Query: 653 KKKKKXXXXPPPPPPP------PXKXXXGGGGGGXXXKKXPPPPPPP 775
           ++++K     PPPPPP      P                 PPPPPPP
Sbjct: 722 EEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 23.8 bits (49), Expect(2) = 1.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 735 PPPPPPXXXFXGGG 694
           PPPPPP      GG
Sbjct: 776 PPPPPPPPAVSAGG 789



 Score = 22.6 bits (46), Expect(2) = 1.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 741 KXPPPPPP 718
           K PPPPPP
Sbjct: 730 KSPPPPPP 737


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 35.1 bits (77), Expect = 0.015
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = +2

Query: 680 PPPPPPPPXKXXXGGGGGGXXXKKXPPPPPPP 775
           PPPPPPPP          G      PPPPPPP
Sbjct: 9   PPPPPPPP----------GFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 754 PPPPPPPP 777
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect(2) = 0.022
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 679 PPPPPPPP 702
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 754 PPPPPPPP 777
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 680 PPPPPPPP 703
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314



 Score = 26.6 bits (56), Expect(2) = 0.022
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 754 PPPPPPPP 777
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.57
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = -2

Query: 770 GGGGGGXFXXXXPPPPPPXXIXXGGGGGGGGXXXXFFFFXGXGP 639
           GGG GG       PPP P      GG GG G         G GP
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP 230


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 679 PPPPPPPPXKXXXGGG 726
           PPPPPPPP      GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 14/47 (29%)
 Frame = +1

Query: 679  PPPPPPPPXKXXXGGGG--------------GGXFXXKXPPPPPPPP 777
            PPPPPP P K                      G      PPPPPPPP
Sbjct: 907  PPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPPP 953



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 683 PPPPPPPXKXXXGGGG 730
           PPPPPPP       GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 23.4 bits (48), Expect(2) = 1.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 679 PPPPPPPP 702
           P PPPPPP
Sbjct: 3   PAPPPPPP 10



 Score = 23.4 bits (48), Expect(2) = 1.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 754 PPPPPPPP 777
           PPPPPP P
Sbjct: 5   PPPPPPAP 12


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +1

Query: 679 PPPPPPPPXKXXXGGGGGGXFXXKXPPPPPPPP 777
           PPP   PP            +    PPPPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDY--NPPPPPPPPP 197


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 644  PXXKKKKKXXXXPPPPPPPP 703
            P      K    PPPPPPPP
Sbjct: 1083 PVANNVSKPSAVPPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 754  PPPPPPPP 777
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +2

Query: 686  PPPPPPXKXXXGGGGGGXXXKKXPPPPPP 772
            PPPPPP      G          PP  PP
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPP 1910


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 679 PPPPPPPP 702
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 754 PPPPPPPP 777
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 23.0 bits (47), Expect(2) = 5.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 754 PPPPPPPP 777
           PPPPPP P
Sbjct: 240 PPPPPPRP 247



 Score = 21.8 bits (44), Expect(2) = 5.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 739 FXXKXPPPPPPP 774
           F     PPPPPP
Sbjct: 234 FSSSSTPPPPPP 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,695
Number of Sequences: 5004
Number of extensions: 38534
Number of successful extensions: 655
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)