Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_L01
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   0.97 
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   3.9  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    26   5.2  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 277  KKKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEEI 402
            K+K Y  Q   SG   +   SIRK+C N+ +     L H  +
Sbjct: 1717 KQKEYVTQLILSGLLNKNTNSIRKTCMNILLYLRRQLGHHAL 1758


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 355 NNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFTNGNT 480
           +N+SVT+   L +  +V++Y L       CR    AFTNG T
Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 653 VSCPGLPVLVPYNSSSSHWLKNDSCRNYP 567
           V CP    LVP+N  + H    DSC N P
Sbjct: 157 VHCPACSNLVPHNQINQHL---DSCLNSP 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,352
Number of Sequences: 5004
Number of extensions: 63936
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)