Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_L01
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative guan...    28   6.4  
AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical ...    28   6.4  
AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p...    28   8.4  
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr...    28   8.4  
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.     28   8.4  
M37232-1|AAA28119.1|  251|Caenorhabditis elegans myosin I protein.     28   8.4  

>U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical
           protein B0495.7 protein.
          Length = 895

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -2

Query: 638 LPVLVPYNSSSSHWLKNDSCRNYPLVMTDPLLRSKFHLRFALALISCNSLLRVVFPLV 465
           LP+L+      SH+  N+  RN  +V  D +L S   + F +   + +S   V+  L+
Sbjct: 463 LPMLIAGAIVHSHYADNNRIRNVEMVQYDTILLSFASILFLMTFYNLSSAFYVLNNLI 520


>AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative
           guanylate-binding protein protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 480 CISVSKRHVMTSTVKLGNMSQNVRCDDFFVTQIF 379
           C ++     M S+V++ N+SQN++ DD    Q+F
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLF 204


>AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2b protein.
          Length = 535

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 480 CISVSKRHVMTSTVKLGNMSQNVRCDDFFVTQIF 379
           C ++     M S+V++ N+SQN++ DD    Q+F
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLF 204


>AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2a protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 480 CISVSKRHVMTSTVKLGNMSQNVRCDDFFVTQIF 379
           C ++     M S+V++ N+SQN++ DD    Q+F
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLF 204


>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 121 VTIHFNTCPTLTSTYNRH*ITQRNKNIVSAPGKR 20
           + IHFN   TL S    H + ++++ I  APG+R
Sbjct: 246 IRIHFNKHGTLASCDIEHYLLEKSRVIRQAPGER 279


>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 121 VTIHFNTCPTLTSTYNRH*ITQRNKNIVSAPGKR 20
           + IHFN   TL S    H + ++++ I  APG+R
Sbjct: 246 IRIHFNKHGTLASCDIEHYLLEKSRVIRQAPGER 279


>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
          Length = 1938

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 121 VTIHFNTCPTLTSTYNRH*ITQRNKNIVSAPGKR 20
           + IHFN   TL S    H + ++++ I  APG+R
Sbjct: 246 IRIHFNKHGTLASCDIEHYLLEKSRVIRQAPGER 279


>M37232-1|AAA28119.1|  251|Caenorhabditis elegans myosin I protein.
          Length = 251

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 121 VTIHFNTCPTLTSTYNRH*ITQRNKNIVSAPGKR 20
           + IHFN   TL S    H + ++++ I  APG+R
Sbjct: 132 IRIHFNKHGTLASCDIEHYLLEKSRVIRQAPGER 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,635,826
Number of Sequences: 27780
Number of extensions: 366064
Number of successful extensions: 872
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)