Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_K19
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.82
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 2.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.4
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 26 5.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.6
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 0.82
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 747 PPPPPXXXXXXXXXPPPPXXXXKKXXXPPP 836
PPPPP PPPP KK P
Sbjct: 12 PPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 747 PPPPPXXXXXXXXXPPPP 800
PPPPP PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPP 27
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 747 PPPPPXXXXXXXXXPPPP 800
PPPPP PPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPP 28
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 750 PPPPXXXXXXXXXPPPPXXXXKKXXXPPP 836
PPPP PPPP PPP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPP 236
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 750 PPPPXXXXXXXXXPPPPXXXXKKXXXPPP 836
PPPP PPPP PPP
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 249
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 750 PPPPXXXXXXXXXPPPPXXXXKKXXXPPP 836
PPPP PPPP PPP
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 262
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 750 PPPPXXXXXXXXXPPPPXXXXKKXXXPPP 836
PPPP PPPP PPP
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 275
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 750 PPPPXXXXXXXXXPPPPXXXXKKXXXPPP 836
PPPP PPPP PPP
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 288
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 750 PPPPXXXXXXXXXPPPPXXXXKKXXXPPP 836
PPPP PPPP PPP
Sbjct: 273 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 301
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 750 PPPPXXXXXXXXXPPPPXXXXKKXXXPPP 836
PPPP PPPP PPP
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 314
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 750 PPPPXXXXXXXXXPPPPXXXXKKXXXPPP 836
PPPP PPPP PPP
Sbjct: 299 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 327
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 750 PPPPXXXXXXXXXPPPPXXXXKKXXXPPP 836
PPPP PPPP PPP
Sbjct: 312 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 340
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +3
Query: 747 PPPPPXXXXXXXXXPPPPXXXXKKXXXPPP 836
P PPP PPPP PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 747 PPPPPXXXXXXXXXPPPP 800
PPPPP PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 747 PPPPPXXXXXXXXXPPPP 800
PPPPP PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 5 GMTYSWKKLCLXSVSAASAIPSLVNAFSSSKPPQTDN 115
G T+ + + L + SAI L N S SKPP D+
Sbjct: 99 GGTHYYLQSLLFEDTTLSAIDKLTNDSSPSKPPHPDS 135
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/29 (34%), Positives = 11/29 (37%)
Frame = +3
Query: 747 PPPPPXXXXXXXXXPPPPXXXXKKXXXPP 833
PPPPP PPP + PP
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPP 389
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,113
Number of Sequences: 5004
Number of extensions: 41891
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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