Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_J15
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.81 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   7.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   10.0 

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 183 HWEAKYFSSLPPR 145
           HWEA+Y  + PPR
Sbjct: 7   HWEARYLPAGPPR 19


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 108 LGCGSRFSGSLSXNRXPDSPLPVTT 34
           L  G+RF GS   +  P  PLP+ T
Sbjct: 424 LADGARFGGSCLIHGPPLPPLPLHT 448


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 108 LGCGSRFSGSLSXNRXPDSPLPVTT 34
           L  G+RF GS   +  P  PLP+ T
Sbjct: 424 LADGARFGGSCLIHGPPLPPLPLHT 448


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +2

Query: 170 FASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNF-QMETYVYKR 346
           FAS   YT   +   S T+  G+  +AL+   +T+ L  +  L + N+N+   E +V  +
Sbjct: 229 FASDPRYTTFTINGESFTLQSGIFGMALS--PLTQNLYYSA-LSSHNLNYVNTEQFVKSQ 285

Query: 347 -RADGTH 364
            +A+  H
Sbjct: 286 YQANNVH 292


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +2

Query: 593 VLDPAQDHQPITEASYVNIPVIALCNTDSP 682
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 571 ECSLDLVSKSTWCE 530
           E S+DLV  ST+CE
Sbjct: 260 ERSVDLVVTSTYCE 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,136
Number of Sequences: 438
Number of extensions: 5502
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)