Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_J09
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    34   0.026
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.75 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.99 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.0  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   5.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.0  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    25   9.3  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.9 bits (74), Expect = 0.026
 Identities = 26/76 (34%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
 Frame = -3

Query: 763 GXXGGPPXXXGXXXXXGGGGXXXFFFFFFFXXGGXXXXGGG-GGXXXXXXXKXPPPGGGX 587
           G  GGPP   G     GG G            GG    GGG GG           PGG  
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHH------GGHGGFGGGPGGFEGGPGGFGGGPGGFG 248

Query: 586 XXXGGFFXXPPGXXGG 539
              GGF   P G  GG
Sbjct: 249 GGLGGFGGGPGGFGGG 264


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 635  PPPPPXXXXPPXXKKKKKKKXXXPPPPXXXXXPXXXGGXPPXP 763
            PP PP    PP  K         PPP      P    G PP P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPV-PPPSTAPPVPTPSAGLPPVP 1230



 Score = 25.4 bits (53), Expect = 9.3
 Identities = 21/82 (25%), Positives = 21/82 (25%), Gaps = 6/82 (7%)
 Frame = +3

Query: 537  PPPXXPGGXXKXPPXXXXPPP-----GGGXFXXXXXXXPP-PPPXXXXPPXKKKKKKKXX 698
            PP   P G    P      PP     G           PP P P    PP  K       
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190

Query: 699  XXPPPPXXXXXPXXXGGPPXXP 764
              PP           G PP  P
Sbjct: 1191 VPPPSEAPPVPKPSVGVPPVPP 1212


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
 Frame = +3

Query: 525 GXXXPPPXXPGGXXKXPPXXXXPPP----GGGXFXXXXXXXPPPP 647
           G   PPP  PG     PP    PPP    GG  +        P P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/48 (31%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
 Frame = +3

Query: 636 PPPPPXXXXP-----PXKKKKKKKXXXXPPPPXXXXXPXXXGGPPXXP 764
           PPPPP    P     P            PPPP         G PP  P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +2

Query: 635 PPPPPXXXXPPXXKKKKKKKXXXPPPPXXXXXPXXXGG 748
           PPP P    PP            PPPP         GG
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +3

Query: 573 PPXXXXPPPGGGXFXXXXXXXPPPPPXXXXPPXKKKKKK 689
           PP    PPP    F       PPPPP       KK+K K
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGY----VKKRKNK 39



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +1

Query: 574 PPXXXPPPXGGGXXXXXXXXXPPPPPXXXPPXXKKKKKKK 693
           PP   PPP             PPPPP   PP   KK+K K
Sbjct: 5   PPGNPPPPPP--PPGFEPPSQPPPPP---PPGYVKKRKNK 39


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/59 (28%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
 Frame = +1

Query: 565 KKXPPXXXPP--------PXGGGXXXXXXXXXPPPPPXXXPPXXKKKKKKKXXXXPPPP 717
           KK PP   PP        P G G         PPPP            + +    PPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -2

Query: 677 FFXXGGXXXGGGGGXXXXXXXKXPPPXGGGXXXGG 573
           ++   G     GGG       K PPP G G   GG
Sbjct: 64  YYEVHGRRLERGGGVLRVEWAKQPPPSGPGSKRGG 98


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +3

Query: 540  PPXXPGGXXKXPPXXXXPPPGGGXFXXXXXXXPPPP 647
            PP         PP    PPP            PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +1

Query: 541  PPXXXGXXKKXPPXXXPPPXGGGXXXXXXXXXPPPP 648
            PP         PP   PPP             PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +3

Query: 636  PPPPPXXXXPPXKKKKKKKXXXXPPPP 716
            PPPPP    PP             PPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +1

Query: 637  PPPPPXXXPPXXKKKKKKKXXXXPPPP 717
            PPPPP   PP              PPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/49 (28%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
 Frame = +1

Query: 577  PXXXPP--PXGGGXXXXXXXXXPPPPPXXXPPXXKKKKKKKXXXXPPPP 717
            P   PP  P             PPPP    PP             PPPP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 19  LCKRSRRNANIELCCVEMFISSWYPSSANDHGFVMP 126
           LCK+  RNA    CC ++F      ++  D  F  P
Sbjct: 284 LCKKLARNACRTPCCDKLFCEECIQTALLDSDFECP 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,157
Number of Sequences: 5004
Number of extensions: 42682
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)