Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_J06
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    29   0.58 
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    28   1.8  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         27   3.1  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    27   4.1  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   5.5  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    26   7.2  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    26   7.2  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    26   7.2  

>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +3

Query: 549 YQSSQVLHQIDRRLTCSRILDTEPQTGIEETLHICVKPFHYSYARDEWLV 698
           Y  S +  QI RRLT  + ++TE +  +   LH+  K    S +R+E +V
Sbjct: 30  YYESDIYSQI-RRLTEEKCIETEKELPVNIKLHVKHKGMSISSSRNELVV 78


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 410 PDNRTLTLKARVKAIRENWNLKYSATYVLCLLKDSGVKP 526
           PD        + K  + N NL+YS    +C + D  +KP
Sbjct: 506 PDTENQESSVKNKKAKSNVNLQYSPKTPICKINDETLKP 544


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 503 ANTERTLHCILNSNFLL 453
           AN +  LHC+L  NFLL
Sbjct: 6   ANAKHKLHCLLKKNFLL 22


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +3

Query: 198 GKVERKRGQRAASHYRQRTYPLMQ-FGNQSPVLDFGFTFIRLTWNVGR*PRCE*SQRQKR 374
           G  ++  GQ   +  ++  Y   +  G    ++ + F F+   W +     C  +   K 
Sbjct: 136 GWADKDYGQTIETDIKRFAYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKT 195

Query: 375 AEPTPSSAAC 404
           AE TP SA C
Sbjct: 196 AELTPLSALC 205


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 283 DWLPNCINGYVRW 245
           D+ PNC NGY+ W
Sbjct: 291 DFEPNCTNGYLTW 303


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 377 GADPVICRLWLPDNRTLTLKARVKAIRENWNL 472
           GADPV+   WL +  TL +K  ++    N N+
Sbjct: 388 GADPVLVDKWLENPETLEVKEVLEKRYANLNI 419


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 755 LVVHVKVXGPQQTIEF---DPFDKPFVPRVRIMERFHADVQ 642
           +VV+ ++  P+  I +        PF+PRV I E ++ D++
Sbjct: 408 IVVYQEIIQPESDIRYILESAATGPFLPRVEIYEDYYNDIK 448


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 334 PTFHVSRINVKPKSSTGDW 278
           P+   + I VKP+S  GDW
Sbjct: 283 PSLEATPITVKPESEMGDW 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,701
Number of Sequences: 5004
Number of extensions: 66351
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)