Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_J04
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    36   0.011
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.044
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.096
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.18 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    30   0.41 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   1.6  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   5.0  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    26   6.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +2

Query: 611 PPPPPPPXGXGXXXKKKKKKKKXXXXPPPPPPP 709
           PPPPPPP                   PPPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 29.1 bits (62), Expect = 0.94
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +2

Query: 611 PPPPPPPXGXGXXXKKKKKKKKXXXXPPPPPPP 709
           PP PPP            KK+     PPPPPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKR-----PPPPPPP 317



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +2

Query: 614 PPPPPPXGXGXXXKKKKKKKKXXXXPPPPPPPP 712
           PP PPP            KK+     PPPPPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKR-----PPPPPPP 317



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 611 PPPPPPPXGXGXXXKKKKKKKKXXXXPPPPPP 706
           PPPPPP            + +     PPPPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRS---APPPPPP 366


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.044
 Identities = 16/34 (47%), Positives = 16/34 (47%)
 Frame = +2

Query: 611 PPPPPPPXGXGXXXKKKKKKKKXXXXPPPPPPPP 712
           PPPPPPP G                 PPPPPPPP
Sbjct: 761 PPPPPPPPGVAGAG------------PPPPPPPP 782



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
 Frame = +2

Query: 611 PPPPPPP---XGXGXXXKKKKKKKKXXXXPPPPPPPP 712
           PPPPPP                       PPPPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 6   PPPXGXKKTXPPXPLKKXPPPXXXFXGXPPXP 101
           PPP     T  P P+   PPP     G PP P
Sbjct: 735 PPPAVIVPTPAPAPI-PVPPPAPIMGGPPPPP 765



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = +2

Query: 599 GFXXPPPPPPPXGXGXXXKKKKKKKKXXXXPPPPPPPP 712
           G   PPPPPP                    PPPPPPPP
Sbjct: 759 GGPPPPPPPPGVAGA-------------GPPPPPPPPP 783



 Score = 26.6 bits (56), Expect(2) = 0.35
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 688 PPPPPPPP 711
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect(2) = 0.27
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 688 PPPPPPPP 711
           PPPPPPPP
Sbjct: 776 PPPPPPPP 783



 Score = 22.6 bits (46), Expect(2) = 0.27
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 661 KKKKKXXXXPPPPPPP 708
           ++++K     PPPPPP
Sbjct: 722 EEQQKLLLKSPPPPPP 737



 Score = 22.2 bits (45), Expect(2) = 0.35
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 658 KKKKKKXXXXPPPPPP 705
           ++++K     PPPPPP
Sbjct: 722 EEQQKLLLKSPPPPPP 737


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 833 PPPPPPPXXPP 801
           PPPPPPP  PP
Sbjct: 238 PPPPPPPTLPP 248



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 689 PPPPPPPP 712
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect(2) = 0.096
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 689 PPPPPPPP 712
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197



 Score = 24.2 bits (50), Expect(2) = 0.096
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 602 FXXPPPPPPP 631
           +  PPPPPPP
Sbjct: 187 YNPPPPPPPP 196



 Score = 24.2 bits (50), Expect(2) = 0.59
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 671 KKXXXXPPPPPPPP 712
           K+    P PPPPPP
Sbjct: 230 KQADPLPAPPPPPP 243



 Score = 23.8 bits (49), Expect(2) = 0.59
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 611 PPPPPPP 631
           PPPPPPP
Sbjct: 191 PPPPPPP 197



 Score = 23.8 bits (49), Expect(2) = 5.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 692 PPPPPPP 712
           PPPPPPP
Sbjct: 238 PPPPPPP 244



 Score = 20.6 bits (41), Expect(2) = 5.9
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 611 PPPPPPP 631
           P PPPPP
Sbjct: 236 PAPPPPP 242


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +2

Query: 611 PPPPPPPXGXGXXXKKKKKKKKXXXXPPPPPPP 709
           PPPPPPP G            +    PPPPPPP
Sbjct: 9   PPPPPPPPGF-----------EPPSQPPPPPPP 30



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 599 GFXXPPPPPPPXGXGXXXKKKKK 667
           GF  P  PPPP   G   K+K K
Sbjct: 17  GFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 688 PPPPPPPP 711
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
 Frame = +2

Query: 602 FXXPPPPPPPXGXGXXXKKKKKKKKXXXX---PPPPPPPP 712
           F  PP P  P G       +  + +       PPPPPPPP
Sbjct: 338 FSAPPAPFFPLGFSPHLNDESSRSRWSNISYSPPPPPPPP 377


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 688 PPPPPPPPXXXFF 726
           PPPPPPPP   F+
Sbjct: 307 PPPPPPPPSNDFW 319



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 688 PPPPPPPPXXXFFF 729
           PPPPPPPP    F+
Sbjct: 306 PPPPPPPPPSNDFW 319


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 673  KXXXXPPPPPPPP 711
            K    PPPPPPPP
Sbjct: 1090 KPSAVPPPPPPPP 1102


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 688 PPPPPPPP 711
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 688 PPPPPPPP 711
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 620 PPPPXGXGXXXKKKKKKKKXXXXPPPPPP 706
           PPP        K++K  KK    PP P P
Sbjct: 415 PPPSIASSPESKRRKCPKKFVARPPVPHP 443


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +2

Query: 611  PPPPPPPXGXGXXXKKKKKKKKXXXXPPPPPP 706
            P PPPPP                   PPPP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,293
Number of Sequences: 5004
Number of extensions: 31057
Number of successful extensions: 570
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)