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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_J01
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    48   1e-07
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    44   1e-06
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    43   3e-06
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    43   3e-06
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    42   5e-06
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    42   5e-06
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    42   7e-06
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    42   7e-06
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    42   7e-06
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    42   7e-06
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    42   7e-06
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    41   2e-05
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    40   2e-05
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    40   2e-05
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    40   3e-05
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    39   5e-05
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    39   5e-05
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    37   3e-04
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    36   3e-04
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    29   0.066
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    28   0.12 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    27   0.27 

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 47.6 bits (108), Expect = 1e-07
 Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
 Frame = +1

Query: 94  IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 252
           I SA  C        + D LL+ Y+R   P S     +VV L L L      N+++   T
Sbjct: 9   ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68

Query: 253 VRILADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLXAAAXTXGDYAL-RAR 426
             +   L+  W D +  W+  E+G  T L V SE +W PD+VL   A    G   + +A 
Sbjct: 69  TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAI 126

Query: 427 VSNTGSXL 450
           +  TG  L
Sbjct: 127 LHYTGKVL 134


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 44.4 bits (100), Expect = 1e-06
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
 Frame = +1

Query: 112 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 276
           C++ TS S +      L   YDR+  P+ K    ++  L ++H N+ E   TV     L+
Sbjct: 28  CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87

Query: 277 MNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVL 378
           + W    L W + E+   ++  V S  +W PD+V+
Sbjct: 88  LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 43.2 bits (97), Expect = 3e-06
 Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
 Frame = +1

Query: 139 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLX 303
           +++ LL++Y+    P       + V   + L+   ++ E    +   A L++ W+D  L 
Sbjct: 58  LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117

Query: 304 WNAGEW-GCSTWLVSSERLWRPDVVLLXAA-AXTXGDYALRARVSNTGSXL 450
           WN  E+ G     ++  +LW+PD+++  +A     G Y     V++ GS L
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCL 168


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 43.2 bits (97), Expect = 3e-06
 Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
 Frame = +1

Query: 139 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLX 303
           +++ LL++Y+    P       + V   + L+   ++ E    +   A L++ W+D  L 
Sbjct: 58  LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117

Query: 304 WNAGEW-GCSTWLVSSERLWRPDVVLLXAA-AXTXGDYALRARVSNTGSXL 450
           WN  E+ G     ++  +LW+PD+++  +A     G Y     V++ GS L
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCL 168


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 42.3 bits (95), Expect = 5e-06
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +1

Query: 229 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLXAA-AXTX 402
           ++ E    +   A L++ W+D  L WN  E+ G     ++  +LW+PD+++  +A     
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84

Query: 403 GDYALRARVSNTGSXL 450
           G Y     V++ GS L
Sbjct: 85  GTYQTSVVVTHNGSCL 100


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 42.3 bits (95), Expect = 5e-06
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
 Frame = +1

Query: 85  TCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRES 243
           +C +A        +    + D LL+ Y+R   P      ++ V + L L      N++  
Sbjct: 6   SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65

Query: 244 ESTVRILADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWRPDVVL 378
             T  +   ++  W D +L WN  ++G   T  V SE +W PD+VL
Sbjct: 66  IMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVL 109


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 41.9 bits (94), Expect = 7e-06
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +1

Query: 229 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLXAA-AXTX 402
           ++ E    +   A L++ W+D  L WN  E+ G     ++  +LW+PD+++  +A     
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84

Query: 403 GDYALRARVSNTGSXL 450
           G Y     V++ GS L
Sbjct: 85  GTYQTSVVVTHDGSCL 100


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 41.9 bits (94), Expect = 7e-06
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +1

Query: 229 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLXAA-AXTX 402
           ++ E    +   A L++ W+D  L WN  E+ G     ++  +LW+PD+++  +A     
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84

Query: 403 GDYALRARVSNTGSXL 450
           G Y     V++ GS L
Sbjct: 85  GTYQTSVVVTHDGSCL 100


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 41.9 bits (94), Expect = 7e-06
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +1

Query: 229 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLXAA-AXTX 402
           ++ E    +   A L++ W+D  L WN  E+ G     ++  +LW+PD+++  +A     
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84

Query: 403 GDYALRARVSNTGSXL 450
           G Y     V++ GS L
Sbjct: 85  GTYQTSVVVTHDGSCL 100


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 41.9 bits (94), Expect = 7e-06
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +1

Query: 229 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLXAA-AXTX 402
           ++ E    +   A L++ W+D  L WN  E+ G     ++  +LW+PD+++  +A     
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84

Query: 403 GDYALRARVSNTGSXL 450
           G Y     V++ GS L
Sbjct: 85  GTYQTSVVVTHDGSCL 100


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 41.9 bits (94), Expect = 7e-06
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +1

Query: 229 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLXAA-AXTX 402
           ++ E    +   A L++ W+D  L WN  E+ G     ++  +LW+PD+++  +A     
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84

Query: 403 GDYALRARVSNTGSXL 450
           G Y     V++ GS L
Sbjct: 85  GTYQTSVVVTHDGSCL 100


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 40.7 bits (91), Expect = 2e-05
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
 Frame = +1

Query: 112 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 270
           C        + D LL+ Y++   P   +   LT+ ++         N++    T  +   
Sbjct: 19  CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76

Query: 271 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVL 378
           ++ +W D +L W+  E+G    L V S+ +WRPD+VL
Sbjct: 77  VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVL 113


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
 Frame = +1

Query: 118 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 285
           N +++S ++D+LL  YD    PD       V + + +R    I E + T  +    + +W
Sbjct: 2   NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61

Query: 286 IDKRLXWNAGEWGCSTWLVSSERLWRPD 369
           +D+RL +  G+   +  +    R+W+PD
Sbjct: 62  VDRRLAFQGGKETLALSISMLARIWKPD 89


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
 Frame = +1

Query: 91  AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NIRESESTV 255
           A+A++      +    +++ LL TY+  E P  ++   +V++  L L    ++ E    +
Sbjct: 11  ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70

Query: 256 RILADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLXAA-AXTXGDYALRARV 429
                L++ W D  + WN  ++G    L +   RLW+PDV++  +A     G Y     V
Sbjct: 71  ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVV 130

Query: 430 SNTGSXL 450
            N G+ L
Sbjct: 131 KNNGTCL 137


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 39.9 bits (89), Expect = 3e-05
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
 Frame = +1

Query: 139 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLX 303
           + D LL+ Y+R   P       LT  L L+ + + E     +++     ++  W D +L 
Sbjct: 37  LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96

Query: 304 WNAGEWGCSTWL-VSSERLWRPDVVL 378
           WN  E+G    L V SE +W PD+VL
Sbjct: 97  WNPEEYGGVEMLYVPSENIWLPDIVL 122


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 39.1 bits (87), Expect = 5e-05
 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
 Frame = +1

Query: 139 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLX 303
           + D LL+ Y++   P  ++  V+ + + L+ + + +     +I+     ++ +W D +L 
Sbjct: 32  LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91

Query: 304 WNAGEWGCSTWL-VSSERLWRPDVVL 378
           W   E+G    L V S+ +WRPD+VL
Sbjct: 92  WEPKEYGGVKMLHVPSDHIWRPDIVL 117


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 39.1 bits (87), Expect = 5e-05
 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
 Frame = +1

Query: 139 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLX 303
           + D LL+ Y++   P  ++  V+ + + L+ + + +     +I+     ++ +W D +L 
Sbjct: 32  LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91

Query: 304 WNAGEWGCSTWL-VSSERLWRPDVVL 378
           W   E+G    L V S+ +WRPD+VL
Sbjct: 92  WEPKEYGGVKMLHVPSDHIWRPDIVL 117


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 36.7 bits (81), Expect = 3e-04
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
 Frame = +1

Query: 193 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPD 369
           +V  L+LH    ++ E    +     +   W D  L WNA E+ G     V   R+WRPD
Sbjct: 33  VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91

Query: 370 VVLLXAAAXTXGDYALRAR--VSNTG 441
            +L   A        +     VS+TG
Sbjct: 92  TILYNNADPQYSSAVINTNVIVSHTG 117


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +1

Query: 190 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWR 363
           K+ VN  L  ++  N+ E    ++    L+  W D +L W+  ++ G     +  +++W+
Sbjct: 51  KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110

Query: 364 PDVVLLXAAAXTXGDYALR 420
           PD+VL   A    G+Y +R
Sbjct: 111 PDIVLFNNA---DGNYEVR 126


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 0.066
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
 Frame = +1

Query: 127 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 291
           ++++++++LL  Y+    P     +  VV   + +R    + E +    +    + +W D
Sbjct: 36  NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95

Query: 292 KRLXWNAGEWGCSTWLVSSERLWRPD 369
            RL +       S  +   ER+WRPD
Sbjct: 96  SRLSFLGPIKSLSLSIKMLERIWRPD 121


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
 Frame = +1

Query: 118 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 285
           N  ++S ++DS   +YD+   P+     + V +T++ L  +++ E +    +    +  W
Sbjct: 8   NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67

Query: 286 IDKRLXWNAGEWGCSTWLVSSE---RLWRPD 369
            D RL +     G  T  V SE    +W PD
Sbjct: 68  TDPRLAFKK-RTGVETLSVGSEFIKNIWVPD 97


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
 Frame = +1

Query: 118 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 285
           N  ++S ++DS   +YD+   P+     + V +T++ L  +++ E      +    +  W
Sbjct: 8   NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67

Query: 286 IDKRLXWNAGEWGCSTWLVSSE---RLWRPD 369
            D RL +     G  T  V SE    +W PD
Sbjct: 68  TDPRLAFKK-RTGVETLSVGSEFIKNIWVPD 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,040
Number of Sequences: 438
Number of extensions: 3114
Number of successful extensions: 41
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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