Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_I18
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.45 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.2  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   3.2  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    27   4.2  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   9.8  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 230 VRVHHANTGRSSNELDRQTTELERR 304
           +R H  + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 154 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 56
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 408 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNXDEMDXVI 569
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+   +  ++
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHSPTHVHNLV 638


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 492 WPNDMQTCTFKFGSRMHNXDEMDXVIDKRIYSMFES 599
           WP D+ T    FG+     D  D + D+ +Y M ++
Sbjct: 105 WPQDLYTLNPHFGTEQDLIDLADALHDRGMYLMVDT 140


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 3/133 (2%)
 Frame = +3

Query: 195 LTPHLRHANIRESESTMRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 374
           L  H   +N+ + +  M +Q  +     +K+L+     +    WL+S +R W   + +++
Sbjct: 388 LLNHHDSSNLMDIKQKM-LQQKIVSYLEEKKLAKRVKNYRLKDWLISRQRFWGTPIPMVH 446

Query: 375 ---AAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 545
                A    +  L  ++ +   + + K    ++P+S  L+ W     TC    G     
Sbjct: 447 CETCGAVPVPESELPVKLPDLDKI-YEKG---TSPLS-NLETWMK--TTCPKCHGPATRE 499

Query: 546 XDEMDXVIDKRIY 584
            D MD  +D   Y
Sbjct: 500 TDTMDTFVDSSWY 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,638
Number of Sequences: 5004
Number of extensions: 55399
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)