Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_I16
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    29   0.61 
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    29   1.1  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   3.3  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   4.3  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.7  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   5.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.6  

>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 368 PLPEPLSHGGSRGLKSSMKQRLLPTRVVDGGVIGEERQ 255
           P   P+S G SRG  SS++Q++  +  ++ G + E  Q
Sbjct: 576 PTTRPVSRGLSRGTSSSLQQKVKASTPLNSGALNETVQ 613


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 540 FDLRGPRYGLVEHRDWANGGGGGIDAPSREGD 445
           F+L    Y L E  +W  GG  G+ AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 588 DVGAECHPTVEGDA*IFDLRGPRYGLVEHRDWANG 484
           DV A C  +++     +DLR PR+ +    DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 522 RYGLVEHRDWANGGGGGIDAPSREGD 445
           +Y L+E +DW  GG  GI  P+ + +
Sbjct: 193 KYPLLEGKDWKIGGSFGIMPPNSDAE 218


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 527 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSF*DVSTR 637
           P  SN  +  ST   H  P+S+R +++PP+  ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
 Frame = +2

Query: 314 SSTTSDRGYHHGTVVPEVAHRH*PHEKHSGALQKGSPSEHHAEASPSRLGASIPPPP-PF 490
           SS+T D G  H     E+     PH + S ++   S    +     + +  + P P  P 
Sbjct: 104 SSSTDDFGISHARSRKEIQSLGRPHTRQSFSVSDVSNGSSYPNIRKNSVHVNAPMPSFPE 163

Query: 491 AQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYAIVPPSF 619
             +      + G + ++  A  +    HS  TS R   + P+F
Sbjct: 164 GSTAVLLKHHSGSKSAS--AISNIAPSHSNSTSSRRPYIHPAF 204


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 419  SPSEHHAEASPSRLGASIPPPPPFA 493
            +P      A+P ++ A  PPPPP +
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMS 1713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,444,375
Number of Sequences: 5004
Number of extensions: 80302
Number of successful extensions: 270
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)