Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_I13
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    28   1.3  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    27   3.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.2  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   9.2  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   9.2  

>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +2

Query: 152 DIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIP 331
           D G+E +E NRR  +  +FS     S ++S     H TL    D  +  V++  + G +P
Sbjct: 494 DSGIEASESNRR--KSDIFSFSGRNSFSVSRPSSSHSTLSYANDSASSAVNVAGETGSLP 551

Query: 332 GIK 340
            ++
Sbjct: 552 PLR 554


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 378 TNAPPXXLDDLAQRCAQYKKDGCHFAKW 461
           ++ PP  + DL Q+  Q K   C+  KW
Sbjct: 71  SSKPPVCISDLLQKSTQTKHISCNDVKW 98


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -3

Query: 462 ATWRSGSRPSCTGRSAGRGRPXPWVVHSSSDP-NSGTTPLSTLMPGMMPFFSSRETRGVP 286
           AT  S S PS    SA      P   +S S P +S + P ++ +P    FFS   +   P
Sbjct: 76  ATPTSSSEPSIFSESA-----TPSETNSYSSPVSSYSDPATSQLPSSTSFFSPTSSEYTP 130

Query: 285 SS 280
           SS
Sbjct: 131 SS 132


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 452  RQVALRAEXRPQHPLVPSYPGKRQCSRPLRF 544
            R++++R+     HP V  YP  R   R  RF
Sbjct: 3347 RRLSIRSNGGTIHPFVIQYPSARNSRREERF 3377


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +1

Query: 43  PELQEELKKIAQAIVAPAKGILAADESTGYNGKAFAGHRRGEHRGEPSSLSPTPIQL*RC 222
           PEL  ++++IAQ    P    LA+   T  N  A A   +  +  E  +L     +L   
Sbjct: 297 PELIPDVERIAQTAAMPEVRALASHALTTLNKAAAAQAAKAANNSEKQALDSACKELREA 356

Query: 223 ALR 231
            L+
Sbjct: 357 VLK 359


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 120 IHRXQWESVCRTSAWRTQRRTVVVIANSYSA 212
           ++R     +    AW+   R++VV+AN+ SA
Sbjct: 310 VNRRDHHYIASLHAWKPDLRSLVVVANTASA 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,838
Number of Sequences: 5004
Number of extensions: 47971
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)