Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_I07
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   139   3e-35
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   139   3e-35
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  139 bits (336), Expect = 3e-35
 Identities = 75/125 (60%), Positives = 88/125 (70%), Gaps = 2/125 (1%)
 Frame = +2

Query: 236 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 415
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 416 VRIPKGAGSPFILAW--*LRQRHQVLPDPGAQLRLQGQVQAGVPRAGVDKKTQFWRYFAG 589
           VRIPK  G  F+  W   L    +  P        + + +  V   GVDK TQF RYF G
Sbjct: 61  VRIPKEQG--FLSYWRGNLANVIRYFPTQALNFAFKDKYKQ-VFLGGVDKNTQFLRYFVG 117

Query: 590 NLASG 604
           NLASG
Sbjct: 118 NLASG 122



 Score = 98.3 bits (234), Expect = 7e-23
 Identities = 52/73 (71%), Positives = 55/73 (75%), Gaps = 2/73 (2%)
 Frame = +3

Query: 432 EQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGRV--LTRRRSSGVTSLVIWPPG 605
           EQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLG V   T+     V +L     G
Sbjct: 66  EQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA---SG 122

Query: 606 GAAGXTSLCFVYP 644
           GAAG TSLCFVYP
Sbjct: 123 GAAGATSLCFVYP 135


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  139 bits (336), Expect = 3e-35
 Identities = 75/125 (60%), Positives = 88/125 (70%), Gaps = 2/125 (1%)
 Frame = +2

Query: 236 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 415
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 416 VRIPKGAGSPFILAW--*LRQRHQVLPDPGAQLRLQGQVQAGVPRAGVDKKTQFWRYFAG 589
           VRIPK  G  F+  W   L    +  P        + + +  V   GVDK TQF RYF G
Sbjct: 61  VRIPKEQG--FLSYWRGNLANVIRYFPTQALNFAFKDKYKQ-VFLGGVDKNTQFLRYFVG 117

Query: 590 NLASG 604
           NLASG
Sbjct: 118 NLASG 122



 Score = 98.3 bits (234), Expect = 7e-23
 Identities = 52/73 (71%), Positives = 55/73 (75%), Gaps = 2/73 (2%)
 Frame = +3

Query: 432 EQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGRV--LTRRRSSGVTSLVIWPPG 605
           EQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLG V   T+     V +L     G
Sbjct: 66  EQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA---SG 122

Query: 606 GAAGXTSLCFVYP 644
           GAAG TSLCFVYP
Sbjct: 123 GAAGATSLCFVYP 135


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
 Frame = -3

Query: 682  TSGGEXG-YVRSRGGY--TKHREVXPAAPPGGQITSEVTPELRLLVNTRPRNT 533
            T  GE   YV +  G+    H+ +  A P   QIT   T    L +  RP  T
Sbjct: 1339 TDAGEYSCYVENTFGHDTVTHQLIVHAPPHSPQITLTATTTNSLTMKVRPHPT 1391


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 628 REVXPAAPPGGQITSEVTPELR 563
           +++ PA P G + +   TPE++
Sbjct: 272 KKLSPATPKGSKCSMITTPEIK 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,960
Number of Sequences: 438
Number of extensions: 3838
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)