Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_I03
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    38   0.001
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    30   0.45 
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    28   1.4  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   3.2  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   7.3  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    26   7.3  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 24/76 (31%), Positives = 40/76 (52%)
 Frame = +1

Query: 286 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 465
           DI   FD + H+ LI  L +     R + +IR  L N  +      T +R ++   G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423

Query: 466 GSALSPLLFSLYINDI 513
           GS +SP+L ++Y++ +
Sbjct: 424 GSIVSPILANIYLHQL 439


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +2

Query: 401 RSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIW-RSSPMTPPSTTRV 577
           ++D+    RVP P  S   + K+PPS       I +  P L+ P   RSS  +P  T   
Sbjct: 184 KTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTS 243

Query: 578 GRRRCFIDDFRPQLPP 625
             +   I D     PP
Sbjct: 244 SSKTFVIVDHSTPSPP 259


>SPBC17D11.05 |tif32||translation initiation factor
            eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +3

Query: 588  VASSTTSDRSYHHGTVVPGSGASTLTPRKAQRCSSKGGRPPNTTLSIPLRXGAXTPRPRR 767
            + +S+ S  ++  G    G G S  +PR ++   S+G  PP  TL+ P + GA  P  RR
Sbjct: 871  IGASSPSPGAWRRGGASAG-GVSRDSPRYSRGGYSRGSVPPRETLA-PSK-GAYVPPSRR 927

Query: 768  S 770
            +
Sbjct: 928  N 928


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 410 IESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPS 565
           + +++R   P+   P  R  PP  R  +  I  I PGL      SS  TP S
Sbjct: 413 LNNQQRESAPLL--PRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQS 462


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 454 GVPQGSALSPLLFSLYINDI 513
           G+PQGS LS  L   Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 642 REPLSHGGSCGLKSSMKQRLLPTRVVDGGVIGE 544
           RE L+HGGS  + + + Q LL  R+    +I E
Sbjct: 371 REDLNHGGSHKINNCIGQILLAKRLGKNRIIAE 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,633,818
Number of Sequences: 5004
Number of extensions: 82467
Number of successful extensions: 272
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)