Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_I01
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    28   1.3  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    28   1.7  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   2.2  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   2.2  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    27   2.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   5.2  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    25   9.0  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    25   9.0  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 276 RIAVVAGECAE--WKVSTMGCPQGSVLGPTLWNVLMDDL 386
           R A+ AG   E  +K   +G PQGS++ P L N+ +  L
Sbjct: 401 RKALNAGYLTENRYKYDIVGTPQGSIVSPILANIYLHQL 439



 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 65  HGFSPGRSTVTALRTL 112
           HGF PGRS  +ALR++
Sbjct: 341 HGFRPGRSCHSALRSI 356


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 165 PKNMAITYLCSKARDTSSRVRSAVTVERPGENP 67
           P NM I+Y    A   S+ +RS+    RP +NP
Sbjct: 333 PNNMNISYPSVPAHTVSTDIRSSPFSGRPSDNP 365


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -2

Query: 329 AHRGHLPFR-TFPRDNGNTASAEIVRQHP 246
           A + HLP + +FP+D G+ +SA  ++Q P
Sbjct: 434 AKKSHLPSKLSFPQDGGSLSSATTLQQLP 462


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 240 IYRMLTDYFRGRRIAVVAGECAEWKVSTMGCPQGSVLGPTLWNVLMDDLL 389
           I++ML ++  G  + +   +  +     +G PQGS+L   L +  M+DL+
Sbjct: 678 IFKMLKEHLSGHIVKIGNSQYLQ----KVGIPQGSILSSFLCHFYMEDLI 723


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/52 (25%), Positives = 20/52 (38%)
 Frame = -2

Query: 314 LPFRTFPRDNGNTASAEIVRQHPIDVGRTVPLGLHHYHGPPRVIESSTDVPR 159
           +P     +      S E V+ +  D+G T+ L   H    P  + S    PR
Sbjct: 632 IPTSILDKTGKTVRSLESVQNYDADIGGTIDLTERHSTASPSTVNSGFSTPR 683


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 282 AVVAGECAEWKVSTMGCPQGSVLGPTLWNVLMDDLLA 392
           A++  + A   ++T     GS+LGP  +N L  +LLA
Sbjct: 98  AILKSDEASASIATYKSENGSILGPLDFNRLQPNLLA 134


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +2

Query: 35  GLTHSISPRQHGFSPGR---STVTALRTLLDVSRALEQRYVMAIFLGHQWSF 181
           GL+HS+S  +  FSP +     V A+  L D+ + L   Y M +   + W F
Sbjct: 142 GLSHSLSRHKLKFSPDKVDTMIVQAIALLDDLDKEL-NTYAMRVREWYGWHF 192


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/17 (47%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
 Frame = +3

Query: 105 ELCWTCRAPWS-RGT*W 152
           E CW C  PW+  G  W
Sbjct: 315 EFCWVCLGPWTEHGNNW 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,691
Number of Sequences: 5004
Number of extensions: 50235
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)