Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_I01
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0394 - 2835438-2835896,2836664-2836913,2837197-2837669,283... 37 0.015
11_06_0754 - 26935647-26937780,26940890-26941827 32 0.44
03_02_0750 + 10909130-10909616,10912257-10912916,10913139-109135... 31 1.3
07_01_0720 + 5512638-5513141,5513588-5514607 29 3.1
05_04_0089 - 17821196-17821306,17821611-17821688,17821801-178218... 29 3.1
01_01_0564 - 4152189-4153643 29 3.1
10_01_0039 + 447573-448911,451247-451296,451322-451423 29 4.1
01_01_0055 - 415666-415767,416510-416602,416776-416850,416920-41... 29 5.4
12_01_0853 + 7996492-7996667,7996751-7997655,7998533-7998624,799... 28 9.4
12_01_0427 + 3359766-3360092,3360425-3360541,3360738-3360893,336... 28 9.4
11_01_0439 + 3353516-3353962,3354403-3354483,3354675-3354947,335... 28 9.4
03_02_0392 - 8070342-8071628 28 9.4
>06_01_0394 -
2835438-2835896,2836664-2836913,2837197-2837669,
2838941-2840608
Length = 949
Score = 37.1 bits (82), Expect = 0.015
Identities = 32/108 (29%), Positives = 47/108 (43%)
Frame = +3
Query: 189 AWWPMIMVKAKRNCPPNIYRMLTDYFRGRRIAVVAGECAEWKVSTMGCPQGSVLGPTLWN 368
A W ++ V N ++ ++T GR AV A + +GC +GSV+G L
Sbjct: 676 AVWLLVAVVLATNYTASLSSLMTAQRLGREAAVTAESLRSAAGAVVGCTEGSVVGRYLEE 735
Query: 369 VLMDDLLALPQGIEGTEMVAYADDVTVLVRGDSRAXLERRAHAVLGLA 512
VLM P G + + LV G+ +A R +HA L LA
Sbjct: 736 VLM-----FP-GHRVRRLAGDEEHRRALVSGEVKAAFLRVSHAKLLLA 777
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 32.3 bits (70), Expect = 0.44
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -1
Query: 276 GVRGNSPSASDRCWADSSAWPSPLSWATTRYRKLH*CPKNMAITYLCSKARD 121
G+ ++ S+S D+S+ S + W TTR+R+ C ++ I +K D
Sbjct: 170 GIATSTASSSTAATGDASSSSSTICWHTTRFRERDFCVPHVGINVAMNKLED 221
>03_02_0750 +
10909130-10909616,10912257-10912916,10913139-10913544,
10914376-10914757,10914918-10915679,10916106-10916165,
10916695-10917105
Length = 1055
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 6 GEGII-CSVLLASPIVLVRASTGSLLDAQR*RRCELCWTCRAPW 134
GEG + V++A P R++TG LDA R RR + +T APW
Sbjct: 315 GEGKVEARVVVADPGAAGRSATGLTLDAPR-RRLLVVYTDLAPW 357
>07_01_0720 + 5512638-5513141,5513588-5514607
Length = 507
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -2
Query: 335 RTAHRGH-LPFRTFPRDNGNTASAEIVRQHPIDVGRTVPLGLHHYHGPPRVIESSTDVP 162
R A RGH + F T PR+ + R VPL L G P ES+ DVP
Sbjct: 46 RLASRGHAVTFVTTPRNAARLGATPPAPLSSSSRLRVVPLDLPAVDGLPEGAESTADVP 104
>05_04_0089 -
17821196-17821306,17821611-17821688,17821801-17821863,
17822167-17823021,17823121-17823236,17823930-17824004,
17826156-17826213
Length = 451
Score = 29.5 bits (63), Expect = 3.1
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Frame = +3
Query: 198 PMIMVKAKRNCPPNIYRMLTDYFRGRRIAVVAGECAEWKVSTMGCPQGSVLGPTLWNV-- 371
P+I ++ + + L +F VV+ EC E +T + ++L TL N
Sbjct: 306 PVISAESAHHWKETLNVSLESHFSSTETNVVSSECPETLENTSPSKEFAILRDTLVNAEN 365
Query: 372 ---LMDDLLALPQGIEGTE-MVAYADDVTVLVRGDSRAXLERR 488
+ DD+ L + E + A+ V V +R D+R + R
Sbjct: 366 LHYVTDDVQNLMTKLSNLEAKLEEAESVIVKLREDTRTTIRER 408
>01_01_0564 - 4152189-4153643
Length = 484
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 214 RPSGTVRPTSIGC*RTISADAVLPLSRGNVRNGRCPRWAVRR 339
RP+G+V S G T+S + +SRG +GR W +R+
Sbjct: 303 RPAGSVVYISFGSLSTMSRRQIAEVSRGMAASGRPFLWVLRK 344
>10_01_0039 + 447573-448911,451247-451296,451322-451423
Length = 496
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Frame = +3
Query: 300 CAEWKVSTMGCPQGSVLGPTLWNVLMDDLLALPQGIEGTEMVAYADDVTVLVRGDSRAXL 479
C EW VS M P + N +D +A + + M +A+++ L+
Sbjct: 393 CGEWVVSGMAQPMLATFLVRCRNADGEDAVAASMLLPPSVMERFAEELAGLMMSKEEYED 452
Query: 480 ERRAHAVLG----LAXAATRPXRRCSTSA 554
ER H V L +P +CST+A
Sbjct: 453 ERVHHGVASLHGMLNHELNKPKYQCSTAA 481
>01_01_0055 -
415666-415767,416510-416602,416776-416850,416920-417071,
417147-417267,417567-418289,418408-418489,418575-418681,
418757-418822,418941-419057,419157-419402
Length = 627
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 315 PSIPHIPPRQRQYGVRGNSPSASDRCWADSSAWPSPLSWATTRYRK 178
PS H+P + SA+ RC A +SA SP +W TR+ +
Sbjct: 25 PSAAHLPSA----AASRRASSAACRCTASASASASPSTWDWTRWTR 66
>12_01_0853 +
7996492-7996667,7996751-7997655,7998533-7998624,
7998751-7998819,7998949-7999047
Length = 446
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 93 TVERPGENPCWRGLIL 46
T ERP + P WRG++L
Sbjct: 255 TAERPSKGPMWRGVVL 270
>12_01_0427 + 3359766-3360092,3360425-3360541,3360738-3360893,
3361009-3361144,3361303-3361436,3361832-3361987,
3362496-3362594,3362817-3362932,3363358-3363532,
3363807-3363885,3363989-3364132,3364206-3364319,
3364415-3364536,3364929-3365011,3365091-3365188,
3365300-3365420,3366237-3366333,3366782-3366874,
3366948-3367053,3367395-3367540,3367617-3367697,
3367838-3367921,3367997-3368132,3368334-3368400,
3368943-3369102
Length = 1048
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +1
Query: 70 VLSWTLNGDGAANSAGRV---ARLGAEVRNGHI 159
V+S L G G +++G V +RLG E+R GH+
Sbjct: 953 VVSMALIGHGKGSTSGNVLIRSRLGTEIRVGHL 985
>11_01_0439 +
3353516-3353962,3354403-3354483,3354675-3354947,
3355081-3355212,3355303-3355476,3355568-3355702,
3355746-3355797,3355954-3356093,3356574-3356705,
3356787-3356921,3356995-3357201,3357779-3357943
Length = 690
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 267 RGRRIAVVAGECAEWKVSTMGCPQGSVLGPTLWNVLMDDLL 389
R R+A+ A AEW+++ C + S+ T+++ L + L
Sbjct: 130 RDERVAIFADTRAEWQIALQACFRQSITVVTIYSSLGEGAL 170
>03_02_0392 - 8070342-8071628
Length = 428
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 345 VLGPTLWNVLMDDLLALPQGIE 410
V+GPT +++MDD L QG+E
Sbjct: 338 VVGPTTCDIIMDDQSELVQGVE 359
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,738,277
Number of Sequences: 37544
Number of extensions: 468586
Number of successful extensions: 1331
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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