Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_H24
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   3.4  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    26   5.9  

>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 473 PPQFLTNLIRFGGGSCH*PW*RVEPPETPHNEVRDG 366
           PP F+T++ + G  S H     V      HNEV DG
Sbjct: 237 PPNFVTSINKAGSSSDHGGELHVTYCPVDHNEVSDG 272


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
 Frame = +1

Query: 394 SGGSTRHHGQWQEP----PPNLIRFVRNCGGPGNSSAGSAVVTRIRRLGLEVALDKTQAL 561
           S   +R  GQ  EP    PP  I+   +  G GN SA    ++        VAL+ T  +
Sbjct: 68  SEAKSREFGQRSEPSPPPPPEGIKIKISTKGAGNPSAKKLKISTEETSDTNVALNNTSEI 127

Query: 562 LFHGPGRAPPLGA 600
                  + P  A
Sbjct: 128 SHKSSNNSQPKDA 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,298,122
Number of Sequences: 5004
Number of extensions: 65707
Number of successful extensions: 181
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)