Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_H12
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom...    29   1.0  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    27   2.4  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    26   7.3  
SPBC12D12.02c |cdm1||DNA polymerase delta subunit Cdm1|Schizosac...    25   9.7  

>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 244 RDVFEHVRSTAKIKHYADQNTSSGTPQEREC 336
           R+VFE     A +KH      SSGT +++ C
Sbjct: 169 REVFESATRAAMLKHKPKVKPSSGTKKKKRC 199


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 22/84 (26%), Positives = 34/84 (40%)
 Frame = +1

Query: 58  CVIQ*LLYVLVKVGQVLK*IVKITYC*LNQESEVTSFCLVFNKIMSTLKLTSEVRSGLYS 237
           CVI  LL  ++K  Q  + I  I+Y  L     +   C     I+    L     +G+  
Sbjct: 221 CVIGYLLSFILKHAQKYRLIDAISYYSL--PLAIPLLCSGIGTIIGVDDLLMSFFAGILF 278

Query: 238 HWRDVFEHVRSTAKIKHYADQNTS 309
           +W D+F    S   +  + DQ  S
Sbjct: 279 NWNDLFSKNISACSVPAFIDQTFS 302


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 651 SLMSWFTVLVPYNXSSSHWLKNDSCRNYP-LVMTDPLLRSKFHLRFALALISCNSLLRVV 475
           SL+ + ++ V Y        + +    YP L + DP+ ++ F+   ++   SC  +L++V
Sbjct: 91  SLLVYLSIAVSYMLWVEKCYQMNKFYAYPILAILDPIKKTIFYTVASIISFSCYIVLKMV 150

Query: 474 FP 469
            P
Sbjct: 151 HP 152


>SPBC12D12.02c |cdm1||DNA polymerase delta subunit
           Cdm1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 202 KLTSEVRSGLYSHWRDVFEH-VRSTAKIKHYADQNTSSGTP 321
           + T   +SG  ++ RDVF H VRS +   H   + +S  +P
Sbjct: 4   RTTQAKKSGQNTNIRDVFPHVVRSNSSQSHIGKKVSSEQSP 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,105,451
Number of Sequences: 5004
Number of extensions: 59509
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)