Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_H12
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   7.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   7.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 168  LLGVQQDNVYPQAYIRSEIRTLLSLA 245
            L+ VQ +N YP+  +  E+R  L  A
Sbjct: 1160 LIIVQAENAYPEVELDRELRPYLRTA 1185


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/48 (20%), Positives = 21/48 (43%)
 Frame = -1

Query: 369 VTDVITRLTYAAFTFLWRTTTSILICIMFYFCCTSNMFKHVTPVRVES 226
           +TD      +    F+W     ++  I+FY    S++  H   +R ++
Sbjct: 211 LTDDEDTKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRNHEKMLREQA 258


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 555 TDPLLRSKFHLRFALALISCNSLLR 481
           ++  + SKF L F   L+S N LLR
Sbjct: 216 SESTIDSKFGLGFTTDLLSYNILLR 240


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/48 (20%), Positives = 21/48 (43%)
 Frame = -1

Query: 369 VTDVITRLTYAAFTFLWRTTTSILICIMFYFCCTSNMFKHVTPVRVES 226
           +TD      +    F+W     ++  I+FY    S++  H   +R ++
Sbjct: 211 LTDDEDTKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRNHEKMLREQA 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,097
Number of Sequences: 438
Number of extensions: 3700
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)