Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_H08
(852 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.50
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.0
08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947 30 2.0
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.6
07_01_0015 + 108338-109186 29 4.7
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282... 28 8.2
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.2
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.2
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 8.2
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.50
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 294 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 130
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 192 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 308
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947
Length = 660
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 349 TAGDYALRARVSNNGSVSWNKALGH*HSNFYAVRQLXPTTCRL 477
T+ D L VS +G+ SW+ S + PTTCRL
Sbjct: 32 TSEDLLLACAVSRHGTASWDAVAKEMQSRCPSAAVFTPTTCRL 74
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 207 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 118
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>07_01_0015 + 108338-109186
Length = 282
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 347 PPPGTTLSAPVYLITAPSPGIKRLDISTPISMQLDNWXQRHADLHVQ 487
PPP L A +PSP L IS+P S D+ Q H L +Q
Sbjct: 110 PPPPPLLPAAAAAPDSPSPPSLLLQISSPKSTTADH-HQNHQQLQLQ 155
>10_08_0838 - 20927020-20927207,20927288-20927491,20927654-20928297,
20928549-20928788,20928884-20928978,20929087-20929434,
20929824-20930042,20930422-20930487,20931191-20931362,
20931456-20931703,20931933-20932073,20932238-20932330,
20932421-20932471,20933571-20933693,20933793-20934035,
20934131-20934211,20935245-20935340,20935535-20936320,
20936443-20937012,20937322-20937427,20938102-20938206,
20938311-20938432,20939321-20939413,20940081-20940104
Length = 1685
Score = 28.3 bits (60), Expect = 8.2
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -3
Query: 463 LGPIV*LHRNWSANVQALYSRRRSRY*IHGRGERSPRRWLQPRLAVPRQAS-TSVPRTPA 287
LG ++ +W A+ +A+ SR RG RSP + +Q AV A+ TS P+
Sbjct: 1264 LGSLLLSSEDWMASHKAVRVTSLSRGYTSNRGLRSPHQ-IQACAAVSCYATCTSYPKFSF 1322
Query: 286 KCCSPIPLRSNSVVCR 239
C L + +CR
Sbjct: 1323 PTCEDQYLSGYNAICR 1338
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 79 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 234
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 376 GRGERSPRRWLQPRLAVPRQASTSVPRTP 290
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 321 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 154
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,329,661
Number of Sequences: 37544
Number of extensions: 441067
Number of successful extensions: 1364
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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