Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_H08
(852 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 52 7e-09
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 48 1e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 48 1e-07
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 47 3e-07
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 47 3e-07
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 47 3e-07
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 46 4e-07
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 46 4e-07
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 45 8e-07
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 44 2e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 44 2e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 44 2e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 44 2e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 44 2e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 44 2e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 43 3e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 43 4e-06
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 43 4e-06
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 42 7e-06
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 33 0.004
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 32 0.006
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 31 0.010
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 27 0.17
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 3.6
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 22 8.2
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 22 8.2
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 22 8.2
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.2
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 52.0 bits (119), Expect = 7e-09
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Frame = +1
Query: 46 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 204
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 205 VRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL-RAR 378
+ L+ W D + W+ E+G T L V SE +W PD+VL N A G + +A
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAI 126
Query: 379 VSNNGSVSW 405
+ G V W
Sbjct: 127 LHYTGKVLW 135
Score = 26.2 bits (55), Expect = 0.38
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 459 PNDMQTCTFKFGSRMHXSDEMDFRXLD 539
P D QTC KFGS + ++D + ++
Sbjct: 153 PFDQQTCFMKFGSWTYDGIQIDLKHIN 179
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 47.6 bits (108), Expect = 1e-07
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Frame = +1
Query: 64 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 222
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 223 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGS 396
++ +W D +L W+ E+G L V S+ +WRPD+VL NA A +A ++ G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 397 VSW 405
V W
Sbjct: 137 VEW 139
Score = 29.5 bits (63), Expect = 0.041
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 459 PNDMQTCTFKFGSRMHXSDEMDFRXLD 539
P D QTC KFGS + ++D R +D
Sbjct: 157 PFDEQTCVMKFGSWTYDGFQVDLRHID 183
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 47.6 bits (108), Expect = 1e-07
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
Frame = +1
Query: 34 LTCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRE 192
++C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 5 ISCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKN 64
Query: 193 SESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYAL 369
T + ++ W D +L WN ++G T V SE +W PD+VL N A G+Y +
Sbjct: 65 QIMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA---DGNYEV 119
Query: 370 ----RARVSNNGSVSW 405
+A + + G V W
Sbjct: 120 TIMTKAILHHTGKVVW 135
Score = 25.8 bits (54), Expect = 0.51
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 459 PNDMQTCTFKFGSRMHXSDEMDFRXL 536
P D QTC KFGS + +D R L
Sbjct: 153 PFDEQTCFMKFGSWTYDGYTVDLRHL 178
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 46.8 bits (106), Expect = 3e-07
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Frame = +1
Query: 91 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 255
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 256 WNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 396
WN E+ G ++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
Score = 22.6 bits (46), Expect = 4.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 459 PNDMQTCTFKFGSRMHXSDEMD 524
P D Q C KFGS + +++D
Sbjct: 187 PFDDQHCDMKFGSWTYDGNQVD 208
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 46.8 bits (106), Expect = 3e-07
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Frame = +1
Query: 91 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 255
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 256 WNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 396
WN E+ G ++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
Score = 22.6 bits (46), Expect = 4.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 459 PNDMQTCTFKFGSRMHXSDEMD 524
P D Q C KFGS + +++D
Sbjct: 187 PFDDQHCDMKFGSWTYDGNQVD 208
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 46.8 bits (106), Expect = 3e-07
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Frame = +1
Query: 91 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLS 255
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 256 WNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 405
WN E+G L V SE +W PD+VL N A G+Y + +A + G VSW
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSW 148
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 459 PNDMQTCTFKFGSRMHXSDEMDFRXL 536
P D Q+C KFGS + ++D + +
Sbjct: 166 PFDEQSCIMKFGSWTYNGAQVDLKHM 191
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 46.0 bits (104), Expect = 4e-07
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 181 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 354
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 355 GDYALRARVSNNGS 396
G Y V++NGS
Sbjct: 85 GTYQTSVVVTHNGS 98
Score = 22.6 bits (46), Expect = 4.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 459 PNDMQTCTFKFGSRMHXSDEMD 524
P D Q C KFGS + +++D
Sbjct: 119 PFDDQHCDMKFGSWTYDGNQVD 140
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 46.0 bits (104), Expect = 4e-07
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Frame = +1
Query: 91 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 255
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 256 WNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 405
W E+G L V S+ +WRPD+VL NA A +A + + G V W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
Score = 29.5 bits (63), Expect = 0.041
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 459 PNDMQTCTFKFGSRMHXSDEMDFRXLDXR 545
P D QTC KFGS + ++D R +D +
Sbjct: 161 PFDEQTCVLKFGSWTYDGFKVDLRHMDEK 189
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 45.2 bits (102), Expect = 8e-07
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +1
Query: 64 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 228
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 229 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL 330
+ W L+W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 44.0 bits (99), Expect = 2e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 181 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 354
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 355 GDYALRARVSNNGS 396
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
Score = 22.6 bits (46), Expect = 4.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 459 PNDMQTCTFKFGSRMHXSDEMD 524
P D Q C KFGS + +++D
Sbjct: 119 PFDDQHCDMKFGSWTYDGNQVD 140
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 44.0 bits (99), Expect = 2e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 181 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 354
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 355 GDYALRARVSNNGS 396
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
Score = 22.6 bits (46), Expect = 4.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 459 PNDMQTCTFKFGSRMHXSDEMD 524
P D Q C KFGS + +++D
Sbjct: 119 PFDDQHCDMKFGSWTYDGNQVD 140
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 44.0 bits (99), Expect = 2e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 181 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 354
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 355 GDYALRARVSNNGS 396
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
Score = 22.6 bits (46), Expect = 4.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 459 PNDMQTCTFKFGSRMHXSDEMD 524
P D Q C KFGS + +++D
Sbjct: 119 PFDDQHCDMKFGSWTYDGNQVD 140
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 44.0 bits (99), Expect = 2e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 181 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 354
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 355 GDYALRARVSNNGS 396
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
Score = 22.6 bits (46), Expect = 4.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 459 PNDMQTCTFKFGSRMHXSDEMD 524
P D Q C KFGS + +++D
Sbjct: 119 PFDDQHCDMKFGSWTYDGNQVD 140
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 44.0 bits (99), Expect = 2e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 181 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 354
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 355 GDYALRARVSNNGS 396
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
Score = 22.6 bits (46), Expect = 4.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 459 PNDMQTCTFKFGSRMHXSDEMD 524
P D Q C KFGS + +++D
Sbjct: 119 PFDDQHCDMKFGSWTYDGNQVD 140
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 44.0 bits (99), Expect = 2e-06
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Frame = +1
Query: 22 YXFLLTCAIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NI 186
+ + A+A++ + +++ LL TY+ E P ++ +V++ L L ++
Sbjct: 4 WTLMAAIALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDV 63
Query: 187 RESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGD 360
E + L++ W D + WN ++G L + RLW+PDV++ N+A G
Sbjct: 64 DEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGT 123
Query: 361 YALRARVSNNGS 396
Y V NNG+
Sbjct: 124 YPTNVVVKNNGT 135
Score = 23.4 bits (48), Expect = 2.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 459 PNDMQTCTFKFGSRMHXSDEMDFRXLD 539
P D Q C KFGS + ++D + D
Sbjct: 156 PFDDQRCEMKFGSWTYDGFQLDLQLQD 182
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 43.2 bits (97), Expect = 3e-06
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Frame = +1
Query: 91 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 255
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 256 WNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 405
W E+G L V S+ +WRPD+VL N A G+Y + +A V +G V W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVW 143
Score = 28.7 bits (61), Expect = 0.072
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 459 PNDMQTCTFKFGSRMHXSDEMDFRXLDXR 545
P D+QTC K GS + ++D R +D +
Sbjct: 161 PYDVQTCVLKLGSWTYDGFKVDLRHMDEK 189
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 42.7 bits (96), Expect = 4e-06
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = +1
Query: 70 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 237
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 238 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 336
+D+RL++ G+ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 42.7 bits (96), Expect = 4e-06
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Frame = +1
Query: 145 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 321
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 322 VVLLNAAATTAGDYALRAR--VSNNGSVSW 405
+L N A + VS+ G V W
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVW 121
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 41.9 bits (94), Expect = 7e-06
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Frame = +1
Query: 142 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWR 315
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 316 PDVVLLNAAATTAGDYALRAR----VSNNGSVSW 405
PD+VL N A G+Y +R + + NG V W
Sbjct: 111 PDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLW 141
Score = 25.4 bits (53), Expect = 0.67
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 450 TIGPNDMQTCTFKFGSRMHXSDEM 521
T P D QTC KFGS D++
Sbjct: 156 TYFPFDQQTCIMKFGSWTFNGDQV 179
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 32.7 bits (71), Expect = 0.004
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Frame = +1
Query: 70 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 237
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 238 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNA------AATTAGDYALRARVSNN 390
D RL++ G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 391 GSVS 402
GS++
Sbjct: 124 GSIT 127
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 32.3 bits (70), Expect = 0.006
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Frame = +1
Query: 79 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 243
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 244 KRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 336
RLS+ S + ER+WRPD N
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 31.5 bits (68), Expect = 0.010
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Frame = +1
Query: 70 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 237
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 238 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNA------AATTAGDYALRARVSNN 390
D RL++ G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 391 GSVS 402
GS++
Sbjct: 124 GSIT 127
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 27.5 bits (58), Expect = 0.17
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 420 TLALQFLCS*TIGPNDMQTCTFKFGSRMHXSDEMDFR 530
TL L + I P+D Q C + S H +DEM F+
Sbjct: 158 TLKLSCAMNFLIYPHDTQECKLQMESLSHTTDEMIFQ 194
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.0 bits (47), Expect = 3.6
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 87 GQ*CCVFAFCRTSYSTSEEKXVTRII 10
G+ CC F T Y + K VT+ I
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQCI 627
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 8.2
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +1
Query: 364 ALRARVSNNGSVSWNKAL 417
ALR N G ++W K +
Sbjct: 240 ALRCLAHNGGEIAWTKVI 257
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 8.2
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +1
Query: 364 ALRARVSNNGSVSWNKAL 417
ALR N G ++W K +
Sbjct: 240 ALRCLAHNGGEIAWTKVI 257
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 8.2
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +1
Query: 364 ALRARVSNNGSVSWNKAL 417
ALR N G ++W K +
Sbjct: 240 ALRCLAHNGGEIAWTKVI 257
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 288 PSAAAPFPCVPTQS 247
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,900
Number of Sequences: 438
Number of extensions: 4243
Number of successful extensions: 81
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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