Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_H07
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0600 - 19166283-19166851,19166988-19168839,19169347-191694...    30   2.4  
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   2.4  
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    29   3.2  
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437...    29   4.2  
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555...    28   9.7  
06_01_1012 + 7926408-7927232                                           28   9.7  
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647...    28   9.7  
01_03_0074 + 12215414-12215603,12216178-12216236,12216605-122167...    28   9.7  

>08_02_0600 -
           19166283-19166851,19166988-19168839,19169347-19169415,
           19171797-19171844,19173500-19173622
          Length = 886

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 54  PGPAFSGLPRIFLAV-RSCRFRFVRDRHDSVRPPFNG 161
           P P ++GLPR F    R C+    +D H  V PP  G
Sbjct: 222 PPPPYTGLPRAFFGQHRGCKVTLYQDAH--VAPPLAG 256


>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 359 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 258
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 335  GSQMPRHLISDAHEWINEIPTVPIYYLXKPQPRE 436
            G+  PR +  D  EW N  PT+   ++ + +PRE
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPRE 1426


>04_04_1105 - 30942735-30942791,30943116-30943466,30943670-30943762,
            30943869-30944072,30944155-30944399,30945019-30945877,
            30946070-30946936,30947113-30947562
          Length = 1041

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -2

Query: 139  ESC-RSRTKRNRHDLTA--RKIRGRPENAGPGSSP 44
            ESC R + ++   D+TA   K RGR  N  PG+SP
Sbjct: 906  ESCSRDKARKRSDDVTAMGEKRRGRMHNHEPGASP 940


>12_01_0655 +
           5546293-5546478,5546760-5546877,5550697-5550776,
           5551329-5552345,5552523-5553344,5553528-5553800
          Length = 831

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 140 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 268
           C T   RS  N H   +  CL+  +H     G   NVI  +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284


>06_01_1012 + 7926408-7927232
          Length = 274

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = -2

Query: 193 GFPLSVPVLS*PLNGGRTESCRSRTKRNRHDLTARKIRGRPENAGPGSSPKRK 35
           G  + VPV      GG  +  +S  +R  H  T    +     A P  SP +K
Sbjct: 171 GVSVPVPVSIAAAAGGECDDAKSEHRRRHHHKTTSAAKNANPAAAPPRSPAKK 223


>04_04_0433 +
           25163111-25163471,25163943-25164154,25164420-25164701,
           25164794-25164916,25165511-25165664,25165754-25165965,
           25166143-25166212,25166294-25166424
          Length = 514

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 140 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 268
           CT++ +R A  W G G    L    HC  P       V+S +CS
Sbjct: 26  CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69


>01_03_0074 +
           12215414-12215603,12216178-12216236,12216605-12216703,
           12216820-12216946,12216989-12217252,12217382-12217503,
           12217575-12217646
          Length = 310

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = -3

Query: 642 NXVRPPILXXAHRFRPXXVSNETMKVVVFQRRSRETISHLXYTXHVSLQCQTRVKLNRVF 463
           N +RPP L  A  F     + E +   ++Q    + ++H  Y  HV    QT  ++    
Sbjct: 202 NVLRPPNLNNAKGFN-MPFNKEGVDEAIYQS---QLMAHQVYANHVDATAQTTWEVTMTQ 257

Query: 462 FPR*FSQARSLGC 424
             R  SQ    GC
Sbjct: 258 DMRPISQVHQHGC 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,910,518
Number of Sequences: 37544
Number of extensions: 356792
Number of successful extensions: 883
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)