Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_H06
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   3.2  
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    26   5.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   7.4  
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.4  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   7.4  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   9.7  

>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/64 (26%), Positives = 23/64 (35%)
 Frame = +3

Query: 243  WEVHGVSSREFRAPSPRRKDWGLGKWPLSSSSMEMILQLLCTDRSIIIFYKSFHRGNKSG 422
            W       RE  AP      WGLG+W L S  +   +     D+       + H G  + 
Sbjct: 1348 WVTSEQEHREAIAPLAAAAAWGLGQWNLISEYVS-AMDRDPQDKEFFSAISAVHLGQYNK 1406

Query: 423  LVGH 434
              GH
Sbjct: 1407 AYGH 1410


>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 622 VGNMIVTNSNMTGAGMLGSGIINNVNKQLPTLM 720
           +G+ +V   N+T    L + I NNVNK L  L+
Sbjct: 148 IGDELVHVQNVTSLSELPTFISNNVNKTLDVLL 180


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 208 TCQGLRIHQPWSQ 170
           T Q LR+HQPWS+
Sbjct: 28  TLQRLRLHQPWSK 40


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 515 PHGWHAPINAKYESPKSTTFDNADEFNSXAA 607
           P GW  P+N    SP S    NA   N  A+
Sbjct: 49  PPGWQPPVNTGPTSPVSINASNAAPSNLKAS 79


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 483 QSPPNVSVSKDLMGGMHQ-LMPNTSHPNQLHSTMPMSSIQXRHERHKRWEY 632
           +SP  +   + L+  ++Q L  N S P Q   ++   +++ RH  H RW+Y
Sbjct: 307 RSPWTIQEKEKLIKTVNQYLQSNPSSPIQW--SLISKNMRNRHRHHCRWKY 355


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
 Frame = +2

Query: 506 IKGPHGWHAPINAK------YESPKSTTFDNA 583
           I G +GW  P +AK      YE+  STT+D A
Sbjct: 370 IDGKNGWLRPRDAKIWGNVIYEATTSTTYDTA 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,143
Number of Sequences: 5004
Number of extensions: 68401
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)