Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_H01
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   4.0  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    26   7.0  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   7.0  

>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 274 QEQRSKEKDALRPVLILSSKKCFEAESFVQYQNINE 381
           +E+R K+K A    +I+S+ K    E+F++Y   N+
Sbjct: 382 EEERKKKKLAKYTEVIISNLKASNIEAFLEYLRSND 417


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 210 WSDMLRQWCKHRKDPIVSSADARAAFQRKG 299
           WS  L ++ KH   P +SS  + ++F + G
Sbjct: 127 WSAKLSRFTKHASKPSLSSNSSDSSFSKSG 156


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = -1

Query: 396 SRCEEFV-DILILDKALRFETFLR*QYQDRPECVLFFGTLLLRLQ-KTL*GP 247
           S+ ++F+ ++ +LD A+  +  +R + +  PE  ++F T+LLR + K+L  P
Sbjct: 258 SQKKQFIRNLALLDMAVGKQRSVRKEKKRNPEESIYFSTILLREETKSLISP 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,851
Number of Sequences: 5004
Number of extensions: 47909
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)