Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_H01
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   2.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.2  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 186 SWDMKMKFWSDMLRQWCKHRKDPIVSSADARAAFQRKGRTPA 311
           S D +  F S + + +CK R + +   +D      R  R+P+
Sbjct: 66  SKDFRFAFKSIICKCFCKRRTNTLRRGSDGSQLAMRNDRSPS 107


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 186 SWDMKMKFWSDMLRQWCKHRKDPIVSSADARAAFQRKGRTPA 311
           S D +  F S + + +CK R + +   +D      R  R+P+
Sbjct: 514 SKDFRFAFKSIICKCFCKRRTNTLRRGSDGSQLAMRNDRSPS 555


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 65  PMMGLPDRGIPEDKLPQCWYD 127
           P+MG+  R +PE  L  C +D
Sbjct: 180 PVMGVWGRFVPEGFLTSCSFD 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,149
Number of Sequences: 438
Number of extensions: 3712
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)