Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_G19
         (809 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    31   1.3  
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    31   1.3  
U23529-7|AAL32211.1|  622|Caenorhabditis elegans G-protein-linke...    31   1.3  
AF117301-1|AAF26202.1|  622|Caenorhabditis elegans G protein-lin...    31   1.3  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    31   1.3  
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    31   1.3  
AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...    28   6.9  

>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 100 WLILPVVICLSQRLSHACLSASRIKAIPRMAQYISFGSLDLTQLLGITVVILELI 264
           WL L   +CL   L+   ++A R  ++   A+Y+ + S   TQLL +   +L  I
Sbjct: 102 WLFLDYTLCLVSILTVLLITADRYLSVCHTAKYLKWQSPTKTQLLIVMSWLLPAI 156


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 100 WLILPVVICLSQRLSHACLSASRIKAIPRMAQYISFGSLDLTQLLGITVVILELI 264
           WL L   +CL   L+   ++A R  ++   A+Y+ + S   TQLL +   +L  I
Sbjct: 102 WLFLDYTLCLVSILTVLLITADRYLSVCHTAKYLKWQSPTKTQLLIVMSWLLPAI 156


>U23529-7|AAL32211.1|  622|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform c protein.
          Length = 622

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 100 WLILPVVICLSQRLSHACLSASRIKAIPRMAQYISFGSLDLTQLLGITVVILELI 264
           WL L   +CL   L+   ++A R  ++   A+Y+ + S   TQLL +   +L  I
Sbjct: 102 WLFLDYTLCLVSILTVLLITADRYLSVCHTAKYLKWQSPTKTQLLIVMSWLLPAI 156


>AF117301-1|AAF26202.1|  622|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1c protein.
          Length = 622

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 100 WLILPVVICLSQRLSHACLSASRIKAIPRMAQYISFGSLDLTQLLGITVVILELI 264
           WL L   +CL   L+   ++A R  ++   A+Y+ + S   TQLL +   +L  I
Sbjct: 102 WLFLDYTLCLVSILTVLLITADRYLSVCHTAKYLKWQSPTKTQLLIVMSWLLPAI 156


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 100 WLILPVVICLSQRLSHACLSASRIKAIPRMAQYISFGSLDLTQLLGITVVILELI 264
           WL L   +CL   L+   ++A R  ++   A+Y+ + S   TQLL +   +L  I
Sbjct: 102 WLFLDYTLCLVSILTVLLITADRYLSVCHTAKYLKWQSPTKTQLLIVMSWLLPAI 156


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 100 WLILPVVICLSQRLSHACLSASRIKAIPRMAQYISFGSLDLTQLLGITVVILELI 264
           WL L   +CL   L+   ++A R  ++   A+Y+ + S   TQLL +   +L  I
Sbjct: 102 WLFLDYTLCLVSILTVLLITADRYLSVCHTAKYLKWQSPTKTQLLIVMSWLLPAI 156


>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -1

Query: 266 CISSRITTVIPSN*VRSKEPKLIY*AIRGIALIRLALRHAWLNL*DKHITTGRI 105
           C +S ITT  PSN   +++ K++Y A+    L  L      +   D HI + ++
Sbjct: 280 CYASDITTSFPSNGKFTEKQKIVYNAVLAANLAVLKAAKPGVRWTDMHILSEKV 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,590,505
Number of Sequences: 27780
Number of extensions: 151992
Number of successful extensions: 278
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)