Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_G16
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...   138   1e-33
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    31   0.27 
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    29   0.81 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   2.5  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    26   5.7  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score =  138 bits (333), Expect = 1e-33
 Identities = 87/261 (33%), Positives = 135/261 (51%), Gaps = 11/261 (4%)
 Frame = +2

Query: 83  AMHHAGKEPFPTIYVDSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENT--- 253
           A+H    +   TI+V  K+ +++++    + LKK +K   +   K    A+AE       
Sbjct: 42  AIHALETDANCTIFV-KKNGSEEFEPITTNALKKAKKGVEQAAKKKAKAAEAEAAAAARA 100

Query: 254 ----EKRSQNLDEAKKILLQEDPSLPKATVVKICETTEHRGQRICIRGWVHRLRRQGKSL 421
               E  ++ L+ AK I+L+E    P A  + I ++T  R  R+ + GWVHR+R Q K +
Sbjct: 101 AAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNGWVHRMRTQ-KGI 159

Query: 422 AXLTLRDGTGYLQCVLHGLLCQ--TYNALVLSTESSVVLYGKLEAVPEGKKAPGGHELTA 595
             + LRDGTG+LQCVL G +    +Y+ + L  ES+V LYG ++ +PEGK APG HEL  
Sbjct: 160 IFIILRDGTGFLQCVLSGKVYDRASYDFINLGPESTVCLYGVIKELPEGKSAPGNHELVV 219

Query: 596 DYWELIGLAPPG--GADAILNEEXLPDVQLXNRXI*SXVKTRPKSYGLPPLXLXXFREHF 769
           DY++++  AP G       LN E  P   L  R +    +T      +    L   R+ F
Sbjct: 220 DYYQILHAAPTGEEAFTNRLNAEAEPSYLLDQRHLVIRGETASSVLKVRARALRAMRDTF 279

Query: 770 XSRRFPKIPPPTLVQTPXEXG 832
            + +  ++ PP +VQT  E G
Sbjct: 280 ENLKMTEVTPPCMVQTQVEGG 300


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 25/87 (28%), Positives = 41/87 (47%)
 Frame = +2

Query: 356 HRGQRICIRGWVHRLRRQGKSLAXLTLRDGTGYLQCVLHGLLCQTYNALVLSTESSVVLY 535
           H G+ I I GWV  +R+  K++    + DGT   Q  L  ++     +  LS  +SV + 
Sbjct: 18  HNGELISINGWVRSIRKL-KNVCFAMVSDGT--CQQALQ-VVTSPEQSKKLSYGASVNIE 73

Query: 536 GKLEAVPEGKKAPGGHELTADYWELIG 616
           G+L      K     +EL A+  ++ G
Sbjct: 74  GQLAVSKNAKLGLQQYELLAEKIKIYG 100


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 440 DGTGYLQCVLHGLLCQTYNALVLSTES 520
           D  GYL+C+LHG   + YN  +   +S
Sbjct: 295 DHLGYLECILHGDSAKRYNMSIEKVDS 321


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 642 ASAPPGGASPINSQ*SAVSS*PPGAFFPSG 553
           A+APPG     N+  S+  + PPG   P+G
Sbjct: 554 ATAPPGAPGSYNTSESSNLNAPPGVSMPNG 583


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 284 KKILLQEDPSLPKATVVKICETTEHR 361
           +KILL E P  P A   K+CET   R
Sbjct: 101 RKILLTEPPMNPVANREKMCETMFER 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,969
Number of Sequences: 5004
Number of extensions: 61972
Number of successful extensions: 203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)