Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_G07
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.0  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    28   1.8  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    27   3.1  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.1  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   7.2  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   9.6  
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    25   9.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 124 PPRVEPPRSNYTFAGAPFPPRAEVATPP 41
           PP   PPRSN      P PP+   A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 259 AYRPWLFRPVLAQDSRKGTDGAVPPL 336
           A+ PW +R  LAQ  +   +  +PP+
Sbjct: 425 AFEPWYYRKCLAQGGKPDPEARLPPM 450


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 318 VGSLPAILCKYRPKQPWPVSICVSRKVRHPRSRP 217
           + S P  L K+R + P    IC  RKV+  R +P
Sbjct: 1   MSSSPPALKKFRKRSPKSCLICRRRKVKCDRQQP 34


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 77  ALPP*SGGRYATCNRQRAPPPPV 9
           +LP   G R +  N+++ PPPPV
Sbjct: 121 SLPSRPGSRPSVLNQEQVPPPPV 143


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
 Frame = -2

Query: 247 PEGEASAVAAH--PVRENRADRLDGSEAGR---RVRQAARPRLQHGP--PRVEPPRSNYT 89
           P   AS + ++  PV E      + + +G    R RQ  R R    P  PRV  P   Y 
Sbjct: 211 PASAASEIISNKDPVVEPTHSASNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYN 270

Query: 88  FAGAPFPPRAEVATPPVIGS 29
                +PP    A P   GS
Sbjct: 271 TPPFGYPPTTSSALPNASGS 290


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 214 PVRENRADRLDGSEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPFPP 65
           P+ +++ D  D         Q   P++Q    R EP  SN+  +  PFPP
Sbjct: 117 PLSDSQLDTGDSPATSETTVQDYNPQVQ-SYCRPEPLSSNHVRSCPPFPP 165


>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -3

Query: 234 HPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTD 124
           H    PT++ R  R  + + R  +   +RRD+  + D
Sbjct: 38  HEEQPPTENRRYARPTAQMNRVIEQQPRRRDYFQNND 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,694
Number of Sequences: 5004
Number of extensions: 30183
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)