Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_G04
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    26   0.36 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.47 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.8  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 12/46 (26%), Positives = 17/46 (36%)
 Frame = +2

Query: 575 CNDFPPTAKDYLNHLHSPAHHKMASXHMEAPWHGVSAHXGLPGQTR 712
           C +F     ++ NH H+ A H   S +     H   AH       R
Sbjct: 414 CANFDNQDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSKSNNR 459


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
 Frame = +2

Query: 47  PPGASMP---GAPHPPDMGAWNQMSLPP---PPGSAPVI 145
           P G  +P   GAP PP     N   +PP    PGS P +
Sbjct: 404 PAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTM 442



 Score = 23.4 bits (48), Expect = 2.5
 Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 5/161 (3%)
 Frame = +2

Query: 50  PGASMPGAPHPPDMGAWNQMSLPPPPGSAPVIKELSIEEQSKKDAAIETEMRHQKAALSK 229
           P  S   +P  P  G+    S  PPPG  P         Q     A  + +   +  L +
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPA--SGIHQMQQLLQQ 80

Query: 230 QREEYIKKAGTLKKELDTLKDQRNELRGDSKRSPSPDTKRF-----LKENTKLQLEIQNK 394
                 +    +++    L+ Q+ +   DS    + + +RF     LK++     E+   
Sbjct: 81  HILSPTQLQSFMQQHSLYLQQQQQQHHQDSSSEHASNQERFGYFSSLKDHQHQFAELGR- 139

Query: 395 LKTINNVVDMLNGIIGEEANVNTIEMKESPERTSKKKSRSP 517
            K +   +  L     E+  +N I+     +   KKK+ +P
Sbjct: 140 -KKLEQAIQQLQ----EQLQLNVIQQTHLLQTADKKKASAP 175


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 693 GFPAKPGRAHQADTYQG 743
           GF   PGR H  D Y G
Sbjct: 135 GFNYDPGRGHIEDDYVG 151


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 95   AWNQMSLPPPP 127
            AW Q   PPPP
Sbjct: 1349 AWRQQQPPPPP 1359


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 717 PGRVWPGSPSWAETP 673
           PGR WPG     + P
Sbjct: 916 PGRAWPGDSDIRQRP 930


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,632
Number of Sequences: 438
Number of extensions: 5385
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)