Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_G02
(828 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.48
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.0
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 2.6
02_05_0996 - 33380363-33380597,33380767-33380851,33381206-333815... 30 2.6
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.4
02_05_0686 - 30900748-30902167,30903442-30904742 29 4.5
01_01_0070 - 542603-542686,542803-543441 29 4.5
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 29 6.0
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 6.0
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 7.9
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 7.9
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.48
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 344 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 180
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 242 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 358
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 825 PPPPPTTPXTXXGXXXGXXPPXXRXAXARGXPG 727
PPPPP P G PP A RG G
Sbjct: 351 PPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGG 383
>02_05_0996 -
33380363-33380597,33380767-33380851,33381206-33381557,
33381690-33382340
Length = 440
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/58 (37%), Positives = 30/58 (51%)
Frame = -1
Query: 405 RRWWQPRLAVPRQASTSVPRTPAKCCSPIPLRSNSVVCRSNSFEDLPVSARWTRTHEC 232
++WW+ R V R+ T PR+PAK PI R+ V R N+ + P RT EC
Sbjct: 216 KKWWKERNEV-REGGT--PRSPAKLSHPIMSRAGEFV-RMNAKDKNP------RTGEC 263
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 257 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 168
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/58 (27%), Positives = 17/58 (29%)
Frame = -2
Query: 827 APRXXPPPXXXPXGXXXXPXPPXXVRPXPGVXPETXXXXPXPXXSXPXXXXXXGXXHP 654
+P PPP P P PP P P P P P P G P
Sbjct: 310 SPAPPPPPPPKPAAAAPPPPPPPKAAPPP--PPPKGPPPPPPAKGPPPPPPPKGPSPP 365
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/46 (28%), Positives = 15/46 (32%)
Frame = -2
Query: 824 PRXXPPPXXXPXGXXXXPXPPXXVRPXPGVXPETXXXXPXPXXSXP 687
P+ PPP P P P V P P P P + P
Sbjct: 87 PKKAPPPPVTPPPVTPPPVTPPPVSPPPATPPPALPPSTPPPVAAP 132
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = -1
Query: 825 PPPPPTTPXTXXGXXXGXXPPXXRXAXARGXPGNXLXXPXP 703
PPPPPT P + P R ARG P + P P
Sbjct: 10 PPPPPTPPPSPSN--RNHRHPASRVGAARGGPRSDPATPIP 48
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/70 (25%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Frame = -2
Query: 824 PRXXP-PPXXXPXGXXXXPXPPXXVRPXPGVXPETXXXXPXPXXSXPXXXXXXGXXHPXX 648
P+ P PP P P PP PG+ P P P P G P
Sbjct: 697 PQYAPQPPSYVPSPPEYAPEPPVYAPYPPGITPSPPEYAPEPPPGPP--GGGGGYLPPVV 754
Query: 647 XXXPFTXXAP 618
P+ P
Sbjct: 755 FPPPYASRGP 764
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 129 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 284
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 371 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 204
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,022,733
Number of Sequences: 37544
Number of extensions: 434665
Number of successful extensions: 2054
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1922
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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