Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_F18
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.82 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   2.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 539 PXGGXXXXPPPPXFFXXXXPPPP 607
           P G     PPPP F     PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -2

Query: 128 GPFL*PTLILFE-GYXPGVNSXVGPTRWLSXEFSPXPP 18
           G F  P    F  G+ P +N     +RW +  +SP PP
Sbjct: 336 GAFSAPPAPFFPLGFSPHLNDESSRSRWSNISYSPPPP 373


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 545 GGXXXXPPPPXFFXXXXPPPP 607
           GG    PPPP       PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 289 PXKIFXXPPPPF*KKXXXXGGXPPPP 366
           P  I   PPPP         G PPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPP 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,427,664
Number of Sequences: 5004
Number of extensions: 18002
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)