Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_F18
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       30   2.0  
03_05_0067 - 20460206-20460703,20461255-20461530                       28   8.1  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
 Frame = +2

Query: 245 PPPPXKKXXDPPPPXXXXXXXXXXXXXXXXXXXXG----XPPPPRGKXXG 382
           PPPP  K   PPPP                    G     PPPP GK  G
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGG 376


>03_05_0067 - 20460206-20460703,20461255-20461530
          Length = 257

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 563 PPPPXFFXXXXPPPP 607
           PPPP +F    PPPP
Sbjct: 15  PPPPQYFQAGPPPPP 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,105,765
Number of Sequences: 37544
Number of extensions: 331386
Number of successful extensions: 2039
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1707
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)