Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_F18
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical ...    29   5.4  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 539 PXGGXXXXPPPPXFFXXXXPPPP 607
           P  G    PPPP  F    PPPP
Sbjct: 76  PPPGPGGIPPPPPMFAGGIPPPP 98



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 539 PXGGXXXXPPPPXFFXXXXPPPP 607
           P G     PPPP F     PPPP
Sbjct: 77  PPGPGGIPPPPPMFAGGIPPPPP 99


>AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical
           protein T22D1.2 protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +2

Query: 239 KKPPPPXKKXXDPPPPXXXXXXXXXXXXXXXXXXXXGXPPPPRG 370
           ++PPPP K    PPPP                      PPPP+G
Sbjct: 62  RRPPPPPKGTGTPPPPPTGEPQDLSAEEGNASRR---PPPPPKG 102



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +2

Query: 239 KKPPPPXKKXXDPPPPXXXXXXXXXXXXXXXXXXXXGXPPPPRG 370
           ++PPPP K    PPPP                      PPPP+G
Sbjct: 125 RRPPPPPKGTGSPPPPPTGEPQDLSGEGNASRR----PPPPPKG 164



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +2

Query: 239 KKPPPPXKKXXDPPPPXXXXXXXXXXXXXXXXXXXXGXPPPPRG 370
           ++PPPP K    PPPP                      PPPP+G
Sbjct: 156 RRPPPPPKGTGSPPPPPTGEPQDLSTEGNASRR----PPPPPKG 195



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +2

Query: 239 KKPPPPXKKXXDPPPPXXXXXXXXXXXXXXXXXXXXGXPPPPRG 370
           ++PPPP K    PPPP                      PPPP+G
Sbjct: 249 RRPPPPPKGTGSPPPPPTGEPQDLSGEGNASRR----PPPPPKG 288



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +2

Query: 239 KKPPPPXKKXXDPPPPXXXXXXXXXXXXXXXXXXXXGXPPPPRG 370
           ++PPPP K    PPPP                      PPPP+G
Sbjct: 31  RRPPPPPKGTGTPPPPPTGEPQDLSGEGNASRR----PPPPPKG 70



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +2

Query: 239 KKPPPPXKKXXDPPPPXXXXXXXXXXXXXXXXXXXXGXPPPPRG 370
           ++PPPP K    PPPP                      PPPP+G
Sbjct: 94  RRPPPPPKGTGTPPPPPTGEPQDLSGEGNASRR----PPPPPKG 133



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +2

Query: 239 KKPPPPXKKXXDPPPPXXXXXXXXXXXXXXXXXXXXGXPPPPRG 370
           ++PPPP K    PPPP                      PPPP+G
Sbjct: 187 RRPPPPPKGTGTPPPPPTGEPQDLSAEGYASRR----PPPPPKG 226



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 239 KKPPPPXKKXXDPPPP 286
           ++PPPP K    PPPP
Sbjct: 280 RRPPPPPKGTGTPPPP 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,853,942
Number of Sequences: 27780
Number of extensions: 199994
Number of successful extensions: 976
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)