Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_F17
         (963 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0499 - 16581343-16581469,16581563-16581676,16581896-165819...    29   4.2  
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060     29   7.3  

>04_03_0499 -
           16581343-16581469,16581563-16581676,16581896-16581931,
           16582964-16583013,16583633-16583705,16583883-16584078,
           16584154-16584445
          Length = 295

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +2

Query: 158 KKPXXGGXNLXKNPXNPXGAPXXKKXNPPXPK 253
           KKP      L KNP NP      KK  PP  K
Sbjct: 17  KKPHKPTKTLAKNPTNPVSTKAKKKKPPPPSK 48


>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
          Length = 794

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 240 PPXPKKXKXGGXFXXXXXQKKXFXXPPPPP 329
           PP P   + GG        K+ +  PPPPP
Sbjct: 14  PPPPPFGRGGGGAGYPRGHKQLYAPPPPPP 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.152    0.530 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,118,953
Number of Sequences: 37544
Number of extensions: 233288
Number of successful extensions: 225
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2788108120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)