Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_F14
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          24   1.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          24   1.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          24   1.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          24   1.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          24   1.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          24   1.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    24   1.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          24   1.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   7.6  

>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 592 TPTTPDLTSISINPLNXVLKRSSRPGLKP 678
           T T+ +L    INP + +LKR +  G KP
Sbjct: 141 TTTSDELKRDIINPEDVMLKRRTGEGSKP 169


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 592 TPTTPDLTSISINPLNXVLKRSSRPGLKP 678
           T T+ +L    INP + +LKR +  G KP
Sbjct: 141 TTTSDELKRDIINPEDVMLKRRTGEGSKP 169


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 592 TPTTPDLTSISINPLNXVLKRSSRPGLKP 678
           T T+ +L    INP + +LKR +  G KP
Sbjct: 141 TTTSDELKRDIINPEDVMLKRRTGEGSKP 169


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 592 TPTTPDLTSISINPLNXVLKRSSRPGLKP 678
           T T+ +L    INP + +LKR +  G KP
Sbjct: 141 TTTSDELKRDIINPEDVMLKRRTGEGSKP 169


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 592 TPTTPDLTSISINPLNXVLKRSSRPGLKP 678
           T T+ +L    INP + +LKR +  G KP
Sbjct: 141 TTTSDELKRDIINPEDVMLKRRTGEGSKP 169


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 592 TPTTPDLTSISINPLNXVLKRSSRPGLKP 678
           T T+ +L    INP + +LKR +  G KP
Sbjct: 141 TTTSDELKRDIINPEDVMLKRRTGEGSKP 169


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 592 TPTTPDLTSISINPLNXVLKRSSRPGLKP 678
           T T+ +L    INP + +LKR +  G KP
Sbjct: 141 TTTSDELKRDIINPEDVMLKRRTGEGSKP 169


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 592 TPTTPDLTSISINPLNXVLKRSSRPGLKP 678
           T T+ +L    INP + +LKR +  G KP
Sbjct: 141 TTTSDELKRGIINPEDVMLKRRTGEGSKP 169


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 17/76 (22%), Positives = 28/76 (36%)
 Frame = +1

Query: 493 LSHYYWRSRPYASSHPPLRSRATSTRSSNPRFHTPTTPDLTSISINPLNXVLKRSSRPGL 672
           LSH   R+     +H P   +   +        TP TP  T++        ++R+ R   
Sbjct: 127 LSHV--RALAAGGNHLPFHEKLVESFPRGGSLPTPVTPTPTTVQQLLRRAQIRRNERRTP 184

Query: 673 KPPXVIXXSHQRISPP 720
            P        + +SPP
Sbjct: 185 DPHDETAKKPRVLSPP 200


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = +3

Query: 540 SPAISGYINPIIKSPIPYTNHPRLNIHFHQSPEXRT 647
           SP      NP +    P   +P  + H  Q P  RT
Sbjct: 422 SPMEYRLYNPALIQSQPSPQYPSTSSHILQQPSIRT 457


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,716
Number of Sequences: 438
Number of extensions: 4161
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)