Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_F13
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   242   3e-65
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   241   6e-65
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    37   0.003
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    27   2.2  
SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces po...    26   6.8  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   9.0  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  242 bits (593), Expect = 3e-65
 Identities = 114/205 (55%), Positives = 141/205 (68%)
 Frame = +1

Query: 79  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAA 258
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL + WEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 259 RAVVAIENPADVFVISPRPFGQRAVLKFAAHTGATPIAGRFAPXAFTNQIQAAFREPRLL 438
           R +  IENPADV V+S R +G RAVLKFAAHTGAT IAGRF P  FTN I   +REPRL+
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124

Query: 439 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAIPCNTXSSHSIGLMWWLLAXEX 618
           +V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N     SIGL+W+LLA E 
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184

Query: 619 AXASXCAPXDXXWDXXXXXXFYRDP 693
                       WD      FYRDP
Sbjct: 185 LRVRGTLSRSAPWDVMPDLYFYRDP 209


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  241 bits (591), Expect = 6e-65
 Identities = 116/201 (57%), Positives = 139/201 (69%)
 Frame = +1

Query: 91  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAARAVV 270
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL + WEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 271 AIENPADVFVISPRPFGQRAVLKFAAHTGATPIAGRFAPXAFTNQIQAAFREPRLLIVLD 450
            IENPADV VIS RP+G RAVLKFAAHTGAT IAGRF P  FTN I   +REPRL+IV D
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129

Query: 451 PAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAIPCNTXSSHSIGLMWWLLAXEXAXAS 630
           P  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N     SIGL W+LLA E     
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189

Query: 631 XCAPXDXXWDXXXXXXFYRDP 693
                   W+      FYRDP
Sbjct: 190 GNISRTTAWEVMPDLYFYRDP 210


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +1

Query: 427 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAIPCNTXSSHSIGLMWWLL 606
           P L+++L+P ++     EA   ++P I + +TD+    V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 607 A 609
           +
Sbjct: 240 S 240


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = -3

Query: 477 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGPW*DD 298
           S GL  L R +   E  F +     +S + W  T +   + G+RG   ++   EGP   D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGPS-AD 225

Query: 297 EHISGVLDG 271
            H SGV  G
Sbjct: 226 LH-SGVFGG 233


>SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 97  RARLILPT-SLRLFELRLNAYNATGRRNGLKA 5
           R   ++P  S RL E     Y+A GR NGLKA
Sbjct: 112 RIEFVIPKGSDRLVESYSGFYDAIGRDNGLKA 143


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 428 GSRNAAWIWLVKAXGAKRPAIGVAPVCAA 342
           G+ +A W WL+   G    A+ VA + +A
Sbjct: 92  GAPSAVWCWLIAGAGCMCIALSVAELVSA 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,719
Number of Sequences: 5004
Number of extensions: 59267
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)