Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_F12
         (1183 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   6.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   6.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 821 GGGGXXXXXPPPPPPP 868
           G G      PPPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPP 343



 Score = 23.8 bits (49), Expect(2) = 6.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 818 GGGGGXXXXXPPPPPP 865
           G G       PPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPP 343



 Score = 21.0 bits (42), Expect(2) = 6.5
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 851 PPPPPP 868
           PPPPPP
Sbjct: 361 PPPPPP 366


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 848  PPPPPPPXXKXXKK 889
            PPPPPPP  +  KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 848 PPPPPPPXXKXXKKKK 895
           PPPPPPP     +K K
Sbjct: 24  PPPPPPPGYVKKRKNK 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,625,981
Number of Sequences: 5004
Number of extensions: 16815
Number of successful extensions: 241
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)