Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_F12
         (1183 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59372-1|CAA42016.1|  342|Homo sapiens homeobox protein protein.       29   2.8  
BC038446-1|AAH38446.1|  673|Homo sapiens SF1 protein protein.          25   9.9  

>X59372-1|CAA42016.1|  342|Homo sapiens homeobox protein protein.
          Length = 342

 Score = 28.7 bits (61), Expect(2) = 2.8
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -1

Query: 868 GGGGGGGGXXXXXPPPPP 815
           GGGGGGGG     P P P
Sbjct: 122 GGGGGGGGGPGRGPSPGP 139



 Score = 22.6 bits (46), Expect(2) = 2.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 877 FXXGGGGGGGG 845
           F  G GGGGGG
Sbjct: 116 FPGGAGGGGGG 126


>BC038446-1|AAH38446.1|  673|Homo sapiens SF1 protein protein.
          Length = 673

 Score = 25.4 bits (53), Expect(2) = 9.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 818 GGGGGXXXXXPPPPPP 865
           G G G     PPPPPP
Sbjct: 37  GPGAGLLAPGPPPPPP 52



 Score = 23.8 bits (49), Expect(2) = 9.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 848 PPPPPPP 868
           PPPPPPP
Sbjct: 72  PPPPPPP 78


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,865,752
Number of Sequences: 237096
Number of extensions: 1642069
Number of successful extensions: 38634
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23662
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16568915230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)