Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_F10
(786 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 31 0.93
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 29 2.9
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 3.8
U39676-3|AAB37032.2| 941|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.0
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 5.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 5.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 5.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.0
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 29 5.0
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 29 5.0
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 29 5.0
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 29 5.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 5.0
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 5.0
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 29 5.0
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 29 5.0
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 5.0
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami... 28 6.6
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 31.1 bits (67), Expect = 0.93
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP K PPPPP
Sbjct: 84 PPPPPPPPPPTLKAPPPPP 102
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP + PPPPP
Sbjct: 70 PPPPPPLISILQQAPPPPP 88
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 71 PPPPPLISILQQAPPPPPP 89
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPPXXXI 505
PPPPP + PPPPP I
Sbjct: 478 PPPPPPPENEPEEFPPPPPSISI 500
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP + PPPPP
Sbjct: 40 PPPPPPPCGGGYEAPPPPP 58
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 41 PPPPPPCGGGYEAPPPPPP 59
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 42 PPPPPCGGGYEAPPPPPPP 60
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 124 PPPPPRKSRAGGSSPPPPP 142
>U39676-3|AAB37032.2| 941|Caenorhabditis elegans Hypothetical
protein C23F12.2 protein.
Length = 941
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 589 PPPPPTLAQSSSNIPPPPP 607
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 795 PPPPPLPPISSGAPPPPPP 813
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 794 PPPPPPLPPISSGAPPPPP 812
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 795 PPPPPLPPISSGAPPPPPP 813
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 794 PPPPPPLPPISSGAPPPPP 812
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 335 PPPPPGMRYPGGMPPPPPP 353
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 334 PPPPPPGMRYPGGMPPPPP 352
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 135 PPPPPHYPPPPPHYPPPPP 153
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 758 PPPPPPPPGGCPPPPPPPP 776
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 759 PPPPPPPGGCPPPPPPPPP 777
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 772 PPPPPPGGFKGGPPPPPPP 790
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 713 PPPPPGLPPITGGPPPPPP 731
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 728 PPPPPGGLPPITGGPPPPP 746
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 744 PPPPPGGLPPISGGPPPPP 762
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 770 PPPPPPPPGGFKGGPPPPP 788
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 771 PPPPPPPGGFKGGPPPPPP 789
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 758 PPPPPPPPGGCPPPPPPPP 776
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 759 PPPPPPPGGCPPPPPPPPP 777
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 772 PPPPPPGGFKGGPPPPPPP 790
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 713 PPPPPGLPPITGGPPPPPP 731
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 728 PPPPPGGLPPITGGPPPPP 746
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 744 PPPPPGGLPPISGGPPPPP 762
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 770 PPPPPPPPGGFKGGPPPPP 788
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 771 PPPPPPPGGFKGGPPPPPP 789
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 345 PPPPPGMRYPGGMPPPPPP 363
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 344 PPPPPPGMRYPGGMPPPPP 362
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 159 PPPPPVSVPSSKPTPPPPP 177
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP K PPPP
Sbjct: 158 PPPPPPVSVPSSKPTPPPP 176
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 159 PPPPPVSVPSSKPTPPPPP 177
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP K PPPP
Sbjct: 158 PPPPPPVSVPSSKPTPPPP 176
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 41 PPPPPMCGCAPPPPPPPPP 59
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 234 PPPPPLPPVGAGAPPPPPP 252
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 341 PPPPPPPPGGCPPPPPPPP 359
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 342 PPPPPPPGGCPPPPPPPPP 360
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 355 PPPPPPGGFKGGPPPPPPP 373
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 296 PPPPPGLPPITGGPPPPPP 314
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 311 PPPPPGGLPPITGGPPPPP 329
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 327 PPPPPGGLPPISGGPPPPP 345
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 353 PPPPPPPPGGFKGGPPPPP 371
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 354 PPPPPPPGGFKGGPPPPPP 372
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 1342 PPPPPPPSDDLTPVPPPPP 1360
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 1344 PPPPPSDDLTPVPPPPPPP 1362
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 1343 PPPPPPSDDLTPVPPPPPP 1361
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 1377 PPPPPLFSPSMILPPPPPP 1395
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 220 PPPPPLPPVGAGAPPPPPP 238
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 220 PPPPPLPPVGAGAPPPPPP 238
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 563 PPPPPLPQNLSGAPPPPPP 581
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 577 PPPPPPPPMLGGPPPPPPP 595
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 578 PPPPPPPMLGGPPPPPPPP 596
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 562 PPPPPPLPQNLSGAPPPPP 580
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 576 PPPPPPPPPMLGGPPPPPP 594
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 538 PPPPPPVGMANGGPPPPPP 556
>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
protein 10 protein.
Length = 2302
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 573 PPPPPXXXXXXXKXPPPPP 517
PPPPP PPPPP
Sbjct: 2278 PPPPPGYMHTPPLPPPPPP 2296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,494,086
Number of Sequences: 27780
Number of extensions: 193219
Number of successful extensions: 1387
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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