Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_F08
         (825 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351...    32   0.48 
02_01_0054 - 404464-405152,406087-406618                               31   1.5  
11_03_0037 + 9136864-9136993,9137147-9137214,9138891-9139145           29   4.5  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    29   4.5  
01_06_1841 + 40267902-40268485,40269290-40270421                       29   5.9  
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    28   7.8  
04_01_0530 - 6928528-6929500,6929514-6930964                           28   7.8  
01_01_0563 + 4142351-4144510,4145610-4147259,4147942-4148185,414...    28   7.8  

>10_08_0267 -
           16333239-16333820,16333904-16334842,16334920-16335172,
           16336837-16337063,16338189-16339388
          Length = 1066

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -3

Query: 484 IEIGVLMSKRLYP-GDGAVIRYTGAESRSPRRWLQPRLAVPRQASTSVPRTP-AKCCTPT 311
           I+ GV      +P  D  V+R+     R  RRWL      PR  ST   R    + CT +
Sbjct: 257 IDFGVPFPSHFHPTSDADVLRWQDRMRRRGRRWLWAFAGAPRPGSTKTVRAQIIEQCTAS 316

Query: 310 P 308
           P
Sbjct: 317 P 317


>02_01_0054 - 404464-405152,406087-406618
          Length = 406

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
 Frame = -1

Query: 348 AFRGHQPSAAPPLPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDY 190
           A  G   + AP    V +  +VDP  L       K  +YS G L L  ++ S   G    
Sbjct: 258 ACEGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGP 317

Query: 189 DFGVGGGVPIVRCEERVDHEG 127
           D G GGG    R   RV  EG
Sbjct: 318 DGGAGGGNLTARLLPRVRTEG 338


>11_03_0037 + 9136864-9136993,9137147-9137214,9138891-9139145
          Length = 150

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 290 D*VGTQGSGGAALGWCPRNACGG 358
           D +G Q SGG ++ WC R A  G
Sbjct: 7   DDLGRQTSGGRSMAWCSRRAVAG 29


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -3

Query: 448 PGDGAVIRYTGAESRSPRRWLQPRLAVPRQASTSVPRTPAKCCTPTPLRSNS 293
           P D    R +  +SRSPRR   P     R  + +  R+PA   + +P+R++S
Sbjct: 213 PRDTQSPRGSPRDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264


>01_06_1841 + 40267902-40268485,40269290-40270421
          Length = 571

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 450 IQETEPLLDTRARRAVVPGGGCSRV*QY 367
           ++E + L+ TRA R V PGGG   V +Y
Sbjct: 335 LRELKILIQTRASRRVPPGGGIHEVTRY 362


>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 240 VHRANTGRSSNELDRQTTELERRGVG 317
           V+ A   +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396


>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 69  VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 209
           +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


>01_01_0563 + 4142351-4144510,4145610-4147259,4147942-4148185,
            4148280-4148830
          Length = 1534

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 451  YPGDG-AVIRYTGAESRSPRRWLQPRLAVPRQASTSVPRTPAKCCTPTPLRSNSVVCRSN 275
            Y GDG A   Y G    SP  +  PR +V  ++  +      +C TP  LR+NSV  R+ 
Sbjct: 1358 YVGDGRACESYDGGSIYSPTGY-SPRFSVKTESPRAFDGLE-RCSTPRFLRTNSVK-RTA 1414

Query: 274  SF 269
            SF
Sbjct: 1415 SF 1416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,778,478
Number of Sequences: 37544
Number of extensions: 457761
Number of successful extensions: 1552
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)