Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_F05
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    28   1.7  
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    28   1.7  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   3.8  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    26   5.1  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   6.7  

>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 257 FAVSPVPQRRGTSHPTGSEMSPKMFIGRRLQ 349
           +A+ P+P++   S  +G  +SP +FI RR+Q
Sbjct: 62  YAIPPLPRKYTVSSFSGGSLSP-IFIARRMQ 91


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 217 RSMMMVEYTRTREIRRQPSAPETRNKPPYWVRNV-SENV 330
           R  ++   T T  IR+    P+  NKPP W+  V ++N+
Sbjct: 187 RQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNI 225


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 378 SVAETFFFYSCSLRPMNIFGDISDPVGWLVPRLWGTGLTA 259
           +VA  FF +   L+ ++IFG+  +P    VP +   G+TA
Sbjct: 111 NVANLFFLFLVILQSISIFGEQVNPGLAAVPLIVVVGITA 150


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 293 SHPTGSEMSPKMFIGRRLQE*KKNVSATEPAGMS-CINRI 409
           SHP GS  S  ++I RR Q   K     EP+  S  +NR+
Sbjct: 503 SHPEGSAGSRNVYIKRRNQRVLKQNMTPEPSQPSPLVNRL 542


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 336 DEDCKSKRKMSLXRNLRGCHAL 401
           DE CK K K+    +++GCH L
Sbjct: 17  DEICKMKAKVVAPVDVQGCHTL 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,346
Number of Sequences: 5004
Number of extensions: 49387
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)