Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_F05
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0080 + 14935664-14935796,14943858-14944175,14944352-149451...    32   0.57 
03_05_0024 - 19934529-19935298,19935359-19935871,19936147-199366...    31   0.75 
07_03_1436 - 26543846-26546806                                         29   3.0  
10_08_1024 + 22371260-22371481,22371514-22372188,22372291-223732...    29   4.0  
06_03_1388 - 29822789-29823307                                         29   4.0  
11_06_0669 - 26084906-26087350                                         29   5.3  
04_03_0895 + 20633554-20634480                                         28   7.0  
08_02_0599 + 19156896-19156960,19157201-19157329,19158536-19158653     28   9.3  

>02_03_0080 +
           14935664-14935796,14943858-14944175,14944352-14945199,
           14945249-14945521
          Length = 523

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -2

Query: 219 PRSGSAGSCRHRRHRRPQPLDWAEPTRPSAKQRALTTTTNNI 94
           P +G +GS  H+  +R +P +    T PS++QR+   T++ I
Sbjct: 178 PTTGGSGSTNHKDRKR-KPKELVATTTPSSRQRSRVNTSDKI 218


>03_05_0024 -
           19934529-19935298,19935359-19935871,19936147-19936635,
           19936738-19937044,19937104-19937130
          Length = 701

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 219 PRSGSAGSCRHRRHRRPQPLDWAEPTRPSAKQRALTTTTNNI 94
           P +G +GS  H+  +R +P D    T PS++QR+   T++ I
Sbjct: 354 PAAGGSGSNNHKDRKR-KPEDLVALTSPSSRQRSRVNTSDKI 394


>07_03_1436 - 26543846-26546806
          Length = 986

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 219 PRSGSAGSCRHRRHRRPQPLDWAEPTRPSAKQRALTTTTNNI 94
           P +G +GS  H+  +R +P +    T PS++QR+   T + I
Sbjct: 619 PTTGGSGSNNHKDRKR-KPEELVATTSPSSRQRSRVNTFDKI 659


>10_08_1024 +
           22371260-22371481,22371514-22372188,22372291-22373236,
           22389377-22389552
          Length = 672

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -2

Query: 252 SGSCIFDHHHRPRSGSAGSCRHRRHRRPQPLDWAEPTRPSAKQRALTTTTNNI 94
           SG+     +  P +G +GS  H+  +R +P +    T PS++QR    T + I
Sbjct: 392 SGTTWKPKNDTPTAGGSGSNNHKDRKR-KPEELVATTSPSSRQRPRVNTFDKI 443


>06_03_1388 - 29822789-29823307
          Length = 172

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 231 HHHRPRSGSAGSCRHRRHRRPQPLDWAEPTRPSAKQRA 118
           HH  P S +A +   ++H++P+        RPS++ RA
Sbjct: 22  HHLNPASSAAAAASAKQHQQPRARLAVTTARPSSRTRA 59


>11_06_0669 - 26084906-26087350
          Length = 814

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +3

Query: 210 RSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKCLRKCSSDEDCKSKRKMSLXRNLRG 389
           R  V DD RI     + P     RDE++  +L    L +  +D   +  R +S   ++ G
Sbjct: 38  RQTVSDDSRIAVTTASPPFVVIGRDEDRDKIL--VLLHETENDGQHEPSRALS--HSIIG 93

Query: 390 CHALTGSXMS*IGQ 431
            H + GS  S + Q
Sbjct: 94  IHGIPGSGKSTLAQ 107


>04_03_0895 + 20633554-20634480
          Length = 308

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 210 GSAGSCRHRRHRRPQPLDWAEPTRPSAKQRALTTTTNNISTC 85
           GS G+  +    RP P  +A+P  PS +    T T  + +TC
Sbjct: 257 GSGGNTSNGGAARPPPSYYADPFVPSPRHLLATPTVPSPATC 298


>08_02_0599 + 19156896-19156960,19157201-19157329,19158536-19158653
          Length = 103

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 280 ETRNKPPYWVRNVSENVHRTKTARVKEKCLCXGTCG 387
           +T+N P   V N+  NVHR +    + + +   +CG
Sbjct: 12  QTKNDPSSLVSNLPPNVHRAQAEAFRRRWIQRTSCG 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,482,717
Number of Sequences: 37544
Number of extensions: 384895
Number of successful extensions: 1017
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)