Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_F05
(760 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr... 31 0.89
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 31 0.89
Z50016-6|CAC42350.1| 448|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z50016-5|CAC42349.1| 506|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z50016-4|CAC42348.1| 475|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z50016-3|CAC42347.1| 487|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z50016-2|CAC42346.1| 487|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF151644-1|AAD42386.1| 448|Caenorhabditis elegans ionotropic GA... 29 2.7
AF151643-1|AAD42385.1| 506|Caenorhabditis elegans ionotropic GA... 29 2.7
AF151642-1|AAD42384.1| 475|Caenorhabditis elegans ionotropic GA... 29 2.7
AF151641-1|AAD42383.1| 487|Caenorhabditis elegans ionotropic GA... 29 2.7
AF151640-1|AAD42382.1| 487|Caenorhabditis elegans ionotropic GA... 29 2.7
Z50070-6|CAA90395.1| 548|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF077534-3|AAC26290.1| 389|Caenorhabditis elegans Hypothetical ... 28 6.3
>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical
protein T21C12.1a protein.
Length = 1106
Score = 31.1 bits (67), Expect = 0.89
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 195 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKCLRKCSSDEDCKS 353
TT S ++ DG +Y + R + +A CP D + + Q C + E CKS
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHCKLEI---ESCKS 190
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 31.1 bits (67), Expect = 0.89
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +3
Query: 273 CPRDEEQATLLGQKCLRKCSSDEDCKSKRKMSLXRNLRGCHALTGSXMS*IGQPEIXKVT 452
CP+ + T +KC+++C +D DC K N G +T S + P I +
Sbjct: 1024 CPKITDLNTAKVEKCIQECKTDSDCGQTSKCCW--NGCGLTCVTSSISRIVPTPSIQQTM 1081
Query: 453 SLVHCSE 473
H E
Sbjct: 1082 PGTHFGE 1088
>Z50016-6|CAC42350.1| 448|Caenorhabditis elegans Hypothetical
protein T21C12.1f protein.
Length = 448
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 195 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 317
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>Z50016-5|CAC42349.1| 506|Caenorhabditis elegans Hypothetical
protein T21C12.1e protein.
Length = 506
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 195 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 317
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>Z50016-4|CAC42348.1| 475|Caenorhabditis elegans Hypothetical
protein T21C12.1d protein.
Length = 475
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 195 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 317
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>Z50016-3|CAC42347.1| 487|Caenorhabditis elegans Hypothetical
protein T21C12.1c protein.
Length = 487
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 195 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 317
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>Z50016-2|CAC42346.1| 487|Caenorhabditis elegans Hypothetical
protein T21C12.1b protein.
Length = 487
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 195 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 317
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>AF151644-1|AAD42386.1| 448|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49C protein.
Length = 448
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 195 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 317
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>AF151643-1|AAD42385.1| 506|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.3 protein.
Length = 506
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 195 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 317
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>AF151642-1|AAD42384.1| 475|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.2 protein.
Length = 475
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 195 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 317
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>AF151641-1|AAD42383.1| 487|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.1 protein.
Length = 487
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 195 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 317
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>AF151640-1|AAD42382.1| 487|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49A protein.
Length = 487
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 195 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 317
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>Z50070-6|CAA90395.1| 548|Caenorhabditis elegans Hypothetical
protein F43G6.6 protein.
Length = 548
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +3
Query: 252 RNSPSAQCPRDEEQATLLGQKCLRKCSSDE-DCKSKRKMSLXRNLRGCHALTGSXMS*IG 428
+N AQ E + L+G+K RKC DE DC S ++ + G M IG
Sbjct: 478 QNVMKAQTKIQETRDQLMGEKQKRKCRGDENDCPSSSAKYTKKSKKD----NGFMMKKIG 533
Query: 429 QPEI 440
+ EI
Sbjct: 534 EEEI 537
>AF077534-3|AAC26290.1| 389|Caenorhabditis elegans Hypothetical
protein K07D4.6 protein.
Length = 389
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 239 IQEPEKFAVSPVPQRRGTSHPTG-SEMSPKMFIG 337
I + ++ VSPV +RRGT+ G SE KMF G
Sbjct: 86 ILDYDRPTVSPVEERRGTNFLAGLSEEQTKMFSG 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,121,988
Number of Sequences: 27780
Number of extensions: 319005
Number of successful extensions: 878
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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