Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_F04
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.57 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    26   5.4  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   7.1  
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    25   9.4  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    25   9.4  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   9.4  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
 Frame = +1

Query: 355 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 507
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 729 PVLSQIKPQAP--LPGGALPSIPLSFSFATILPPESKI 622
           P    + P AP  LP  A PS+P+    A  LPP + I
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPI 455


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 369 ETNKIEPRSYSIIPCTKYSSSIFSP 295
           E N ++P+S +++P T +  SI SP
Sbjct: 27  ERNPVKPQSSNVVPGTSHIGSIKSP 51


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 400 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 507
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 591 WLGGQLPGNQRFWTPGGVWLQS*NLKELTEGHHQEVEPAA*FDST 725
           WLGGQL        P  ++L    +    EG +  V+ AA F ST
Sbjct: 118 WLGGQLFSAMVVRKPADLFLNEIGVPYEDEGDYVVVKHAALFTST 162


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
 Frame = -3

Query: 386 ITSEFWKPTK*--NRDHTLLFHA----RNIQAAFLARFEHSNLFKVKLSAHLDTHRRAPR 225
           +T   W P+    N D  LL       R  +  F A  +   L +  LS H+ TH  AP 
Sbjct: 110 VTKLLWNPSSVGSNTDSQLLASTDQQLRLWKTDFEAGIDSPLLCQASLSTHVKTHNNAPL 169

Query: 224 *DFD 213
             FD
Sbjct: 170 TSFD 173


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 708 PQAPLPGGALPSIPLSFSFATILPPESKIFGFPEAA 601
           P + +P  ALP  PLSFS     P ++     PE+A
Sbjct: 418 PTSTMPE-ALPREPLSFSLPEKAPEKATNISIPESA 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,093,388
Number of Sequences: 5004
Number of extensions: 63487
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)