Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_F04
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341...    29   5.6  
04_01_0260 - 3506672-3508981                                           28   7.4  
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765...    28   9.7  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   9.7  

>06_02_0257 -
           13533689-13533714,13533799-13533925,13534013-13534121,
           13534193-13534272,13534758-13534979,13536070-13536318,
           13537032-13537484,13539834-13540556
          Length = 662

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 708 PQAPLPGGALPSIPLSFSFATILPPESKIFGFP 610
           P +   GG  P +  SF    IL P+SK++GFP
Sbjct: 71  PSSAAAGGGGPGMTTSFR---ILCPQSKVYGFP 100


>04_01_0260 - 3506672-3508981
          Length = 769

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -2

Query: 717 QIKPQAPLPGGALPSIPLSFSFATILPPESKIFGFPEAARRAIVVT 580
           +I  + PLP    P  P+ F  +   PP   I GF +    A+  T
Sbjct: 456 RIPVEYPLPPHPYPMAPMEFDLSLPAPPPKPITGFDQELNDALDFT 501


>03_02_0774 +
           11074508-11074880,11076270-11076370,11076453-11076509,
           11076596-11076690,11077480-11077579,11078272-11078330,
           11078874-11079001,11079362-11079440,11079708-11079795,
           11080490-11080590,11080822-11080900,11081740-11081850,
           11082655-11082750,11082885-11083007,11085750-11085947,
           11086071-11086172,11086570-11086634,11086888-11087008,
           11088540-11088697,11088823-11088973,11089414-11089521,
           11089939-11090031,11090285-11090321,11090659-11090906,
           11091396-11091542,11091929-11092099,11092166-11092175,
           11093360-11093505
          Length = 1114

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 708 PQAPLPGGALPSIPLSFSFATILPPESKIFGFPEAARRAIVVTSA 574
           P +P P    P  PL     T++PP +    FP   RR +   SA
Sbjct: 22  PSSPAP----PPRPLLLLPKTLIPPAAAAMEFPRRGRRDVAAASA 62


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 90  RNNFSIRYWSWNYRGC 43
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,571,172
Number of Sequences: 37544
Number of extensions: 471672
Number of successful extensions: 1224
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)